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BaseInfo

ncRNA ID novel_osa_miR671
Species Oryza sativa
Class miRNA
Genome position Chr8:7725574-7725729 [+]
Reference genome IRGSP-1.0
Source SRR1742988;SRR1742992;SRR1742994;SRR2040389;SRR2040392;SRR2040393;SRR5351737;SRR5351742;SRR1738214;SRR1738216;SRR1738219;SRR1738221
Length 23
Mature sequence(if miRNA) 134 - UCAAGGACCGUAGAAUUGCUCUA - 156
Stem-loop(if miRNA) --             A                           CUUUUUC  U      -           U      C
  GAGCAAUUUUACG UCCUUGAGGAGGUACCAUGAGGUACCA       UA UGUAAA UUUGGUACCUC UGGUAC U
  ||||||||||||| |||||||||||||||||||||||||||       || |||||| ||||||||||| ||||||
  CUCGUUAAGAUGC AGGAACUCUUUUAUGGUACUCCAUGGU       AU ACAUUU AAAUCAUGGAG AUCAUG A
AU             C                           -UUUUAA  C      U           U      A
Stem-loop sequence GAGCAAUUUUACGAUCCUUGAGGAGGUACCAUGAGGUACCACUUUUUCUAUUGUAAAUUUGGUACCUCUUGGUACCUAAGUACUAUGAGGUACUAAAUUUUACACUAAAUUUUUGGUACCUCAUGGUAUUUUCUCAAGGACCGUAGAAUUGCUCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015779910.1
ncRNA:23   AUCUCGUUAAGAUGCCAGGAACU   1
  |||||=||||||||||||=||||
targets:412   UAGAGUAAUUCUACGGUCUUUGA   434

2.5 PREDICTED: Oryza sativa Japonica Group pEARLI1-like lipid transfer protein 1 (LOC9272463), mRNA pEARLI1-like lipid transfer protein 1(LOC9272463) coding protein psRNATarget
XM_015757723.1
ncRNA:23   AUCUCGUUAAGAUGCCAGGAACU   1
  *||||=||||||||||||=||||
targets:421   GAGAGUAAUUCUACGGUCUUUGA   443

2.5 PREDICTED: Oryza sativa Japonica Group TD and POZ domain-containing protein 4 (LOC9271695), mRNA TD and POZ domain-containing protein 4(LOC9271695) coding protein psRNATarget
XM_015791346.1
ncRNA:23   AUCUCGUUAAGAUGCCAGGAACU   1
  *||||=||||=||||||||||||
targets:2400   GAGAGUAAUUUUACGGUCCUUGA   2422

2.5 PREDICTED: Oryza sativa Japonica Group cysteine-rich receptor-like protein kinase 10 (LOC4343479), mRNA cysteine-rich receptor-like protein kinase 10(LOC4343479) coding protein psRNATarget
XM_015786627.1
ncRNA:23   AUCUCGUUAAGAUGCCAGGAACU   1
  |*|||||||||||=|||||||||
targets:533   UUGAGCAAUUCUAUGGUCCUUGA   555

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281210 (LOC107281210), mRNA uncharacterized LOC107281210(LOC107281210) coding protein psRNATarget
XM_015786027.1
ncRNA:23   AUCUCGUUAAGAUGCCAGGAACU   1
  ||-||||||||||||||||||||
targets:4596   UA-AGCAAUUCUACGGUCCUUGA   4617

0.0 PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA ABC transporter C family member 8(LOC9267441) coding protein psRNATarget
AK288305.1
ncRNA:23   AUCUCGUUAAGAUGCCAGGAACU   1
  |||||*||||=||||||||||||
targets:3833   UAGAGGAAUUUUACGGUCCUUGA   3855

2.5 Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence NA coding protein psRNATarget
AK105471.1
ncRNA:23   AUCUCGUUAAGAUGCCAGGAACU   1
  *||||||||||||||||||||*|
targets:1223   AAGAGCAAUUCUACGGUCCUUAA   1245

1.5 Oryza sativa Japonica Group cDNA clone:001-127-A01, full insert sequence NA coding protein psRNATarget
XM_015765620.1
ncRNA:23   AUCUCGUUAAGAUGCCAGGAACU   1
  *||||||||||||||||||||*|
targets:1231   AAGAGCAAUUCUACGGUCCUUAA   1253

1.5 PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X1, mRNA probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919) coding protein psRNATarget
XM_015765621.1
ncRNA:23   AUCUCGUUAAGAUGCCAGGAACU   1
  *||||||||||||||||||||*|
targets:1249   AAGAGCAAUUCUACGGUCCUUAA   1271

1.5 PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X3, mRNA probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919) coding protein psRNATarget
AK072846.1
ncRNA:23   AUCUCGUUAAGAUGCCAGGAACU   1
  *||||||||||||||||||||*|
targets:1683   AAGAGCAAUUCUACGGUCCUUAA   1705

1.5 Oryza sativa Japonica Group cDNA clone:J023143D15, full insert sequence NA coding protein psRNATarget
XM_015790029.1
ncRNA:23   AUCUCGUUAAGAUGCCAGGAACU   1
  *||||||||||||||||||||*|
targets:2064   AAGAGCAAUUCUACGGUCCUUAA   2086

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X1, mRNA uncharacterized LOC4342289(LOC4342289) coding protein psRNATarget
XM_015790030.1
ncRNA:23   AUCUCGUUAAGAUGCCAGGAACU   1
  *||||||||||||||||||||*|
targets:2108   AAGAGCAAUUCUACGGUCCUUAA   2130

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X2, mRNA uncharacterized LOC4342289(LOC4342289) coding protein psRNATarget
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