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BaseInfo

ncRNA ID	novel_osa_miR666
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:11568006-11568217 [-]
Reference genome	IRGSP-1.0
Source	SRR1742988;SRR1742989;SRR1742990;SRR1742991;SRR1742993;SRR1742994;SRR1742995;SRR1742996;SRR5049786;SRR5049792;SRR1738210;SRR1738211;SRR1738212;SRR1738214;SRR1738216;SRR1738217;SRR1738219;SRR1738221;SRR1738222;SRR1738223;SRR1738224
Length	22
Mature sequence(if miRNA)	191 - UUAAUAUAUGAUGUUGUUGACU - 212
Stem-loop(if miRNA)	---UU     A   UG UG              C        G  U          A     AC  -         -  --UU    UU  UG  A    UUU    AU      AAUAU UGA  U  UUGACUUUUGGGCA ACGUUUGA CA UCAUCUUAUU AAAAA  UA UGUAAGUAU CA    UAUU  GU  UG UUUG   UAUC  C      ||||| |||  |  |||||||||||||| |||||||| || |||||||||| |||||  || ||||||||| ||    ||||  ||  || ||||   ||||      UUAUA ACU  G  AACUGAAAACCUGU UGCAAACU GU AGUAGAAUAA UUUUU  AU ACGUUUAUA GU    AUAA  CA  AC GAAU   AUAG  A AAGAU     C   GU GU              A        G  U          A     AA  C         C  UUUU    UU  GU  -    UUC    AA
Stem-loop sequence	UUAAUAUAUGAUGUUGUUGACUUUUGGGCACACGUUUGAGCAUUCAUCUUAUUAAAAAAACUAUGUAAGUAUCAUUUAUUUUGUUGUGAUUUGUUUUAUCAUCAAAGAUACUUUAAGCAUGACUUAAUAUUUUUGCAUAUUUGCACUAAAUUUUUAAAUAAGAUGAUUGGUCAAACGUAUGUCCAAAAGUCAAUGGUGUCACAUAUUUAGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163965.1	ncRNA:22   UCAGUUGUUGUAGUAUAUAAUU   1   |||||||=|||||||||||||| targets:192   AGUCAACGACAUCAUAUAUUAA   213 Target Full Sequence	1.0	Sequence 1629 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235634.1	ncRNA:22   UCAGUUGUUGUAGUAUAUAAUU   1   |||||||=|||||||||||||| targets:192   AGUCAACGACAUCAUAUAUUAA   213 Target Full Sequence	1.0	Sequence 1629 from Patent EP2985353	NA	coding protein	psRNATarget
HI403504.1	ncRNA:22   UCAGUUGUUGUAGUAUAUAAUU   1   |||||||=|||||||||||||| targets:192   AGUCAACGACAUCAUAUAUUAA   213 Target Full Sequence	1.0	Sequence 1629 from Patent EP2074227	NA	coding protein	psRNATarget
AK289005.1	ncRNA:22   UCAGUUGUUGUAGUAUAUAAUU   1   |*||||||||=||||||||||| targets:1746   AAUCAACAACGUCAUAUAUUAA   1767 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090088O08, full insert sequence	NA	coding protein	psRNATarget
XM_015770301.1	ncRNA:22   UCAGUUGUUGUAGUAUAUAAUU   1   *|||||*|||||*||||||||| targets:5544   CGUCAAGAACAUGAUAUAUUAA   5565 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At1g68930 (LOC4328019), transcript variant X5, mRNA	putative pentatricopeptide repeat-containing protein At1g68930(LOC4328019)	coding protein	psRNATarget
XM_015770300.1	ncRNA:22   UCAGUUGUUGUAGUAUAUAAUU   1   *|||||*|||||*||||||||| targets:5599   CGUCAAGAACAUGAUAUAUUAA   5620 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At1g68930 (LOC4328019), transcript variant X4, mRNA	putative pentatricopeptide repeat-containing protein At1g68930(LOC4328019)	coding protein	psRNATarget
XM_015770299.1	ncRNA:22   UCAGUUGUUGUAGUAUAUAAUU   1   *|||||*|||||*||||||||| targets:5614   CGUCAAGAACAUGAUAUAUUAA   5635 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At1g68930 (LOC4328019), transcript variant X3, mRNA	putative pentatricopeptide repeat-containing protein At1g68930(LOC4328019)	coding protein	psRNATarget
XM_015770298.1	ncRNA:22   UCAGUUGUUGUAGUAUAUAAUU   1   *|||||*|||||*||||||||| targets:5669   CGUCAAGAACAUGAUAUAUUAA   5690 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative pentatricopeptide repeat-containing protein At1g68930 (LOC4328019), transcript variant X2, mRNA	putative pentatricopeptide repeat-containing protein At1g68930(LOC4328019)	coding protein	psRNATarget