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BaseInfo

ncRNA ID	novel_osa_miR663
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:12978601-12978679 [-]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1556014
Length	19
Mature sequence(if miRNA)	1 - GGAGAGAUGGCUGAGUGGU - 19
Stem-loop(if miRNA)	--  G G         -G       AU     -    GUA   UA U AGUCAUUUC  UAUGGCU  GUUCU AUUU   G   || | |||||||||  |||||||  ||||| ||||   G   GU A UCGGUAGAG  GUGUCGG  UAGGA UAAA   A UG  G G         AG       AU     A    AUA
Stem-loop sequence	UAGUGAGUCAUUUCGUAUGGCUAUGUUCUAUUUGUAGGAAUAAAAUAAGGAUUAGGCUGUGGAGAGAUGGCUGAGUGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288615.1	ncRNA:19   UGGUGAGUCGGUAGAGAGG   1   ||||||||||||||||||| targets:5986   ACCACUCAGCCAUCUCUCC   6004 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090053P07, full insert sequence	NA	coding protein	psRNATarget
AK288615.1	ncRNA:19   UGGUGAGUCGGUAGAGAGG   1   *|||||||||||||||||| targets:973   UCCACUCAGCCAUCUCUCC   991 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090053P07, full insert sequence	NA	coding protein	psRNATarget
XM_015778156.1	ncRNA:19   UGGUGAGUCGGUAGAGAGG   1   |||=|||=||||||||||| targets:1442   ACCGCUCGGCCAUCUCUCC   1460 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group photosystem I assembly protein Ycf3 (LOC107280506), mRNA	photosystem I assembly protein Ycf3(LOC107280506)	coding protein	psRNATarget
XM_015780209.1	ncRNA:19   UGGUGAGUCGGUAGAGAGG   1   |||=|||=||||||||||| targets:1443   ACCGCUCGGCCAUCUCUCC   1461 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group photosystem I assembly protein Ycf3-like (LOC107280760), mRNA	photosystem I assembly protein Ycf3-like(LOC107280760)	coding protein	psRNATarget
AK288999.1	ncRNA:19   UGGUGAGUCGGUAGAGAGG   1   |||=|||=||||||||||| targets:1448   ACCGCUCGGCCAUCUCUCC   1466 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090088F15, full insert sequence	NA	coding protein	psRNATarget