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BaseInfo

ncRNA ID	novel_osa_miR660
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:6496199-6496366 [+]
Reference genome	IRGSP-1.0
Source	SRR1742988;SRR1742993;SRR1742995;SRR1743002;SRR2040409;SRR4407958;SRR4407960
Length	23
Mature sequence(if miRNA)	1 - UUUGAUUGCAACGUUUGACCACU - 23
Stem-loop(if miRNA)	--    A   C                          UU       C    AUAGAAAACGAAAAG     -    AAG  CGGU   UUUG UUG AACGUUUGACCACUCGUCUUAUUCAA  UUUUUUG AAAU               UUGUG CUUA   UA    A   |||| ||| ||||||||||||||||||||||||||  ||||||| ||||               ||||| ||||   ||   AAAC AAC UUGCAAACUGGUGAGCAGAAUAAGUU  AAAAAAC UUUA               AACAC GAAU   AU    G AA    G   A                          UU       -    AUAAUAAAUCAAAUA     U    GAA  AAUA
Stem-loop sequence	UUUGAUUGCAACGUUUGACCACUCGUCUUAUUCAAUUUUUUUUGCAAAUAUAGAAAACGAAAAGUUGUGCUUAAAGUACGGUAGAUAAUAAAGUAAGUCACAAAUAAACUAAAUAAUAAUUUCAAAAAAUUUUGAAUAAGACGAGUGGUCAAACGUUACAAGCAAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK100009.1	ncRNA:23   UCACCAGUUUGCAACGUUAGUUU   1   ||||||||||||||||||*|||| targets:1037   AGUGGUCAAACGUUGCAAGCAAA   1059 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013138B09, full insert sequence	NA	coding protein	psRNATarget
AK064773.1	ncRNA:23   UCACCAGUUUGCAACGUUAGUUU   1   ||||||||||||||||||*|||| targets:3057   AGUGGUCAAACGUUGCAAGCAAA   3079 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013000A22, full insert sequence	NA	coding protein	psRNATarget
AK288920.1	ncRNA:23   UCACCAGUUUGCAACGUUAGUUU   1   ||||||||||||||||||*|||| targets:4053   AGUGGUCAAACGUUGCAAGCAAA   4075 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
AK102017.1	ncRNA:23   UCACCAGUUUGCAACGUUAGUUU   1   |*||||||||||||||||*|||| targets:1056   AAUGGUCAAACGUUGCAAGCAAA   1078 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033080F19, full insert sequence	NA	coding protein	psRNATarget
XM_015773783.1	ncRNA:23   UCACCAGUUUGCAACGUUAGUUU   1   ||||*|||||||||||||*|||| targets:1977   AGUGAUCAAACGUUGCAAGCAAA   1999 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X1, mRNA	alanine aminotransferase 2(LOC9266500)	coding protein	psRNATarget
XM_015773784.1	ncRNA:23   UCACCAGUUUGCAACGUUAGUUU   1   ||||*|||||||||||||*|||| targets:2071   AGUGAUCAAACGUUGCAAGCAAA   2093 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X2, mRNA	alanine aminotransferase 2(LOC9266500)	coding protein	psRNATarget