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BaseInfo

ncRNA ID novel_osa_miR653
Species Oryza sativa
Class miRNA
Genome position Chr6:30200891-30201056 [-]
Reference genome IRGSP-1.0
Source SRR1742988;SRR1742989;SRR1742990;SRR1742994;SRR1742996;SRR3123648;SRR5351740;SRR1738212;SRR1738214;SRR1738216;SRR1738217;SRR1738219;SRR1738221;SRR1738235;SRR1738237
Length 23
Mature sequence(if miRNA) 1 - UCAAGGACCGUAGAAUUGCUCUU - 23
Stem-loop(if miRNA) --                      G     C            UUUUUUC  U      -           U  A     AGGU
  GAGCAAUUUUACGGUUCUUGAG AGGUA CAUGAGGUACCA       UA UGUAAA UUUGGUACCUC UG UACCU    A
  |||||||||||||||||||||| ||||| ||||||||||||       || |||||| ||||||||||| || |||||
  CUCGUUAAGAUGCCAGGAACUC UCCAU GUACUCCAUGGU       AU GCAUUU AAACCAUGGAG AC AUGGA    C
UU                      A     U            -UUUUAA  C      U           U  C     AUAU
Stem-loop sequence GAGCAAUUUUACGGUUCUUGAGGAGGUACCAUGAGGUACCAUUUUUUCUAUUGUAAAUUUGGUACCUCUUGAUACCUAGGUACUAUAAGGUACCAUGAGGUACCAAAUUUUACGCUAAAUUUUUGGUACCUCAUGUUACCUACUCAAGGACCGUAGAAUUGCUCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015757723.1
ncRNA:23   UUCUCGUUAAGAUGCCAGGAACU   1
  =||||=||||||||||||=||||
targets:421   GAGAGUAAUUCUACGGUCUUUGA   443

2.5 PREDICTED: Oryza sativa Japonica Group TD and POZ domain-containing protein 4 (LOC9271695), mRNA TD and POZ domain-containing protein 4(LOC9271695) coding protein psRNATarget
AK105471.1
ncRNA:23   UUCUCGUUAAGAUGCCAGGAACU   1
  |||||||||||||||||||||*|
targets:1223   AAGAGCAAUUCUACGGUCCUUAA   1245

1.5 Oryza sativa Japonica Group cDNA clone:001-127-A01, full insert sequence NA coding protein psRNATarget
XM_015765620.1
ncRNA:23   UUCUCGUUAAGAUGCCAGGAACU   1
  |||||||||||||||||||||*|
targets:1231   AAGAGCAAUUCUACGGUCCUUAA   1253

1.5 PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X1, mRNA probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919) coding protein psRNATarget
XM_015765621.1
ncRNA:23   UUCUCGUUAAGAUGCCAGGAACU   1
  |||||||||||||||||||||*|
targets:1249   AAGAGCAAUUCUACGGUCCUUAA   1271

1.5 PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X3, mRNA probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919) coding protein psRNATarget
AK072846.1
ncRNA:23   UUCUCGUUAAGAUGCCAGGAACU   1
  |||||||||||||||||||||*|
targets:1683   AAGAGCAAUUCUACGGUCCUUAA   1705

1.5 Oryza sativa Japonica Group cDNA clone:J023143D15, full insert sequence NA coding protein psRNATarget
XM_015790029.1
ncRNA:23   UUCUCGUUAAGAUGCCAGGAACU   1
  |||||||||||||||||||||*|
targets:2064   AAGAGCAAUUCUACGGUCCUUAA   2086

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X1, mRNA uncharacterized LOC4342289(LOC4342289) coding protein psRNATarget
XM_015790030.1
ncRNA:23   UUCUCGUUAAGAUGCCAGGAACU   1
  |||||||||||||||||||||*|
targets:2108   AAGAGCAAUUCUACGGUCCUUAA   2130

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X2, mRNA uncharacterized LOC4342289(LOC4342289) coding protein psRNATarget
XM_015791346.1
ncRNA:23   UUCUCGUUAAGAUGCCAGGAACU   1
  =||||=||||=||||||||||||
targets:2400   GAGAGUAAUUUUACGGUCCUUGA   2422

2.5 PREDICTED: Oryza sativa Japonica Group cysteine-rich receptor-like protein kinase 10 (LOC4343479), mRNA cysteine-rich receptor-like protein kinase 10(LOC4343479) coding protein psRNATarget
XM_015779910.1
ncRNA:23   UUCUCGUUAAGAUGCCAGGAACU   1
  *||||=||||||||||||=||||
targets:412   UAGAGUAAUUCUACGGUCUUUGA   434

2.5 PREDICTED: Oryza sativa Japonica Group pEARLI1-like lipid transfer protein 1 (LOC9272463), mRNA pEARLI1-like lipid transfer protein 1(LOC9272463) coding protein psRNATarget
XM_015786627.1
ncRNA:23   UUCUCGUUAAGAUGCCAGGAACU   1
  **|||||||||||=|||||||||
targets:533   UUGAGCAAUUCUAUGGUCCUUGA   555

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281210 (LOC107281210), mRNA uncharacterized LOC107281210(LOC107281210) coding protein psRNATarget
XM_015786027.1
ncRNA:23   UUCUCGUUAAGAUGCCAGGAACU   1
  ***||||||||||||||||||||
targets:4595   UUAAGCAAUUCUACGGUCCUUGA   4617

0.0 PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA ABC transporter C family member 8(LOC9267441) coding protein psRNATarget
AK288305.1
ncRNA:23   UUCUCGUUAAGAUGCCAGGAACU   1
  *||||*||||=||||||||||||
targets:3833   UAGAGGAAUUUUACGGUCCUUGA   3855

2.5 Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence NA coding protein psRNATarget
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