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BaseInfo

ncRNA ID	novel_osa_miR646
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:5957781-5957892 [-]
Reference genome	IRGSP-1.0
Source	SRR1742988;SRR1742991
Length	24
Mature sequence(if miRNA)	89 - UCGUGAGAUGAAUCUUUUGAGCCU - 112
Stem-loop(if miRNA)	--UC                            U  A G      - --AUA   -  U     GUGAGAUGAAUCUUUUGAGCCUAAUUAG CC U AUUAGC C     AGU GC A     |||||||||||||||||||||||||||| || | |||||| |     ||| ||     CGCUCUGCUUAGAAAACUCGGAUUAAUU GG A UAAUCG G     UCA UG C UUGA                            C  C G      U AACAG   A  A
Stem-loop sequence	UCGUGAGAUGAAUCUUUUGAGCCUAAUUAGUCCAUGAUUAGCCAUAAGUGCUACAGUAACUGACAAGUGCUAAUGACGGCUUAAUUAGGCUCAAAAGAUUCGUCUCGCAGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288244.1	ncRNA:24   UCCGAGUUUUCUAAGUAGAGUGCU   1   |||||||||||||||||||||||| targets:1691   AGGCUCAAAAGAUUCAUCUCACGA   1714 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090014C01, full insert sequence	NA	coding protein	psRNATarget
AK120219.1	ncRNA:24   UCCGAGUUUUCUAAGUAGAGUGCU   1   ||||||||||||||||||||=||| targets:612   AGGCUCAAAAGAUUCAUCUCGCGA   635 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013041B17, full insert sequence	NA	coding protein	psRNATarget
AK105537.1	ncRNA:24   UCCGAGUUUUCUAAGUAGAGUGCU   1   |||||=||||||||||||||||*| targets:687   AGGCUUAAAAGAUUCAUCUCACCA   710 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-127-H05, full insert sequence	NA	coding protein	psRNATarget
XM_015778499.1	ncRNA:24   UCCGAGUUUUCUAAGUAGAGUGCU   1   ||*||=||||||||||||||=||| targets:24   AGACUUAAAAGAUUCAUCUCGCGA   47 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group LRR receptor-like serine/threonine-protein kinase ERECTA (LOC4334979), transcript variant X3, mRNA	LRR receptor-like serine/threonine-protein kinase ERECTA(LOC4334979)	coding protein	psRNATarget
AK099773.1	ncRNA:24   UCCGAGUUUUCUAAGUAGAGUGCU   1   ||*||=||||||||||||||=||| targets:721   AGACUUAAAAGAUUCAUCUCGCGA   744 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013095E04, full insert sequence	NA	coding protein	psRNATarget
AK065510.1	ncRNA:24   UCCGAGUUUUCUAAGUAGAGUGCU   1   ||*||=||||||||||||||=||| targets:791   AGACUUAAAAGAUUCAUCUCGCGA   814 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013030L03, full insert sequence	NA	coding protein	psRNATarget
AK288737.1	ncRNA:24   UCCGAGUUUUCUAAGUAGAGUGCU   1   ||*|||||*|||||||||||=||| targets:1470   AGACUCAAUAGAUUCAUCUCGCGA   1493 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090063M20, full insert sequence	NA	coding protein	psRNATarget