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BaseInfo

ncRNA ID	novel_osa_miR643
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:13545903-13545996 [-]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1743000;SRR1555747;SRR1555749;SRR2097779;SRR2098560;SRR2098822;SRR2098823;SRR2099567;SRR1556011;SRR1556014;SRR4407955;SRR1556016;SRR1298766;SRR4407960;SRR4407961;SRR5049786;SRR5049787;SRR5049792;SRR5351739;SRR1556020;SRR1612403;SRR1654491
Length	24
Mature sequence(if miRNA)	1 - GUUGAUUCUUUUUGGGACGGAGGG - 24
Stem-loop(if miRNA)	--              A  C      C      C      A    AA   CUCCGUUCCAGAAA AA CAACUU UGGGGA AAAUCU GACA  U   |||||||||||||| || |||||| |||||| |||||| ||||   GAGGCAGGGUUUUU UU GUUGAA ACCUCU UUUAGA CUGU  G GG              C  A      U      A      C    AC
Stem-loop sequence	CUCCGUUCCAGAAAAAACCAACUUCUGGGGACAAAUCUAGACAAAUGCAUGUCCAGAUUUAUCUCCAUAAGUUGAUUCUUUUUGGGACGGAGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015763036.1	ncRNA:24   GGGAGGCAGGGUUUUUCUUAGUUG   1   ||=||||||||||||||||||||| targets:116   CCUUCCGUCCCAAAAAGAAUCAAC   139 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group CEN-like protein 2 (LOC4351520), mRNA	CEN-like protein 2(LOC4351520)	coding protein	psRNATarget
AK067617.1	ncRNA:24   GGGAGGCAGGGUUUUUCUUAGUUG   1   ||||||||||||||||||||=||* targets:1991   CCCUCCGUCCCAAAAAGAAUUAAG   2014 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013109M02, full insert sequence	NA	coding protein	psRNATarget
XM_015795330.1	ncRNA:24   GGGAGGCAGGGUUUUUCUUAGUUG   1   ||||||||||||||||||||=||* targets:2125   CCCUCCGUCCCAAAAAGAAUUAAG   2148 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4345510 (LOC4345510), mRNA	uncharacterized LOC4345510(LOC4345510)	coding protein	psRNATarget
XM_015789440.1	ncRNA:24   GGGAGGCAGGGUUUUUCUUAGUUG   1   ||=|||||=||||||||||||||* targets:2986   CCUUCCGUUCCAAAAAGAAUCAAA   3009 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group LRR receptor-like serine/threonine-protein kinase GSO1 (LOC9267138), transcript variant X4, mRNA	LRR receptor-like serine/threonine-protein kinase GSO1(LOC9267138)	coding protein	psRNATarget
XM_015789439.1	ncRNA:24   GGGAGGCAGGGUUUUUCUUAGUUG   1   ||=|||||=||||||||||||||* targets:3124   CCUUCCGUUCCAAAAAGAAUCAAA   3147 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group LRR receptor-like serine/threonine-protein kinase GSO1 (LOC9267138), transcript variant X3, mRNA	LRR receptor-like serine/threonine-protein kinase GSO1(LOC9267138)	coding protein	psRNATarget
XM_015789438.1	ncRNA:24   GGGAGGCAGGGUUUUUCUUAGUUG   1   ||=|||||=||||||||||||||* targets:3127   CCUUCCGUUCCAAAAAGAAUCAAA   3150 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group LRR receptor-like serine/threonine-protein kinase GSO1 (LOC9267138), transcript variant X2, mRNA	LRR receptor-like serine/threonine-protein kinase GSO1(LOC9267138)	coding protein	psRNATarget
XM_015789437.1	ncRNA:24   GGGAGGCAGGGUUUUUCUUAGUUG   1   ||=|||||=||||||||||||||* targets:3274   CCUUCCGUUCCAAAAAGAAUCAAA   3297 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group LRR receptor-like serine/threonine-protein kinase GSO1 (LOC9267138), transcript variant X1, mRNA	LRR receptor-like serine/threonine-protein kinase GSO1(LOC9267138)	coding protein	psRNATarget
AK240800.1	ncRNA:24   GGGAGGCAGGGUUUUUCUUAGUUG   1   |*||||||*||||||||||||||| targets:240   CACUCCGUACCAAAAAGAAUCAAC   263 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065002J06, full insert sequence	NA	coding protein	psRNATarget
XM_015784276.1	ncRNA:24   GGGAGGCAGGGUUUUUCUUAGUUG   1   =|||||*||==||||||||||||| targets:1808   UCCUCCCUCUUAAAAAGAAUCAAC   1831 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group MLO-like protein 1 (LOC9268698), transcript variant X1, mRNA	MLO-like protein 1(LOC9268698)	coding protein	psRNATarget
AK121347.1	ncRNA:24   GGGAGGCAGGGUUUUUCUUAGUUG   1   =|||||*||==||||||||||||| targets:2534   UCCUCCCUCUUAAAAAGAAUCAAC   2557 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023121J07, full insert sequence	NA	coding protein	psRNATarget