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BaseInfo

ncRNA ID novel_osa_miR642
Species Oryza sativa
Class miRNA
Genome position Chr5:16122429-16122629 [+]
Reference genome IRGSP-1.0
Source SRR1742988;SRR1849766;SRR1849771;SRR2040403;SRR5351740
Length 24
Mature sequence(if miRNA) 1 - AACGUAGAUUAUCGACAAAACCGA - 24
Stem-loop(if miRNA) --AA          C         G           C   AA                         U           C      A  -----G    AUUA
    CGUAGAUUAU GACAAAACC AUUUUAUAACC CUA  CUAUUUUGCGAGACGAAUUUAAUGA GUAUAUUAAUC AUGAUU GU      GAUG    C
    |||||||||| ||||||||| ||||||||||| |||  ||||||||||||||||||||||||| ||||||||||| |||||| ||      ||||
    GCAUCUAAUG CUGUUUUGG UAAGAUAUUGG GAU  GAUAAAACGCUCUGCUUAGAUUGCU CAUAUAAUUAG UACUAA CG      CUAC    U
AUUA          A         G           A   CC                         C           A      A  AUGUCA    GAUG
Stem-loop sequence AACGUAGAUUAUCGACAAAACCGAUUUUAUAACCCCUAAACUAUUUUGCGAGACGAAUUUAAUGAUGUAUAUUAAUCCAUGAUUAGUGGAUGAUUACUGUAGCAUCACUGUAGCAAAUCAUAGAUUAAUAUACCUCGUUAGAUUCGUCUCGCAAAAUAGCCUAGAGGUUAUAGAAUGGGUUUUGUCAGUAAUCUACGAUUA