ncRNA ID | novel_osa_miR642 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr5:16122429-16122629 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR1742988;SRR1849766;SRR1849771;SRR2040403;SRR5351740 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AACGUAGAUUAUCGACAAAACCGA - 24 |
Stem-loop(if miRNA) |
--AA          C         G           C   AA                         U           C      A  -----G    AUUA     CGUAGAUUAU GACAAAACC AUUUUAUAACC CUA  CUAUUUUGCGAGACGAAUUUAAUGA GUAUAUUAAUC AUGAUU GU      GAUG    C     |||||||||| ||||||||| ||||||||||| |||  ||||||||||||||||||||||||| ||||||||||| |||||| ||      ||||     GCAUCUAAUG CUGUUUUGG UAAGAUAUUGG GAU  GAUAAAACGCUCUGCUUAGAUUGCU CAUAUAAUUAG UACUAA CG      CUAC    U AUUA          A         G           A   CC                         C           A      A  AUGUCA    GAUG |
Stem-loop sequence | AACGUAGAUUAUCGACAAAACCGAUUUUAUAACCCCUAAACUAUUUUGCGAGACGAAUUUAAUGAUGUAUAUUAAUCCAUGAUUAGUGGAUGAUUACUGUAGCAUCACUGUAGCAAAUCAUAGAUUAAUAUACCUCGUUAGAUUCGUCUCGCAAAAUAGCCUAGAGGUUAUAGAAUGGGUUUUGUCAGUAAUCUACGAUUA |