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BaseInfo

ncRNA ID	novel_osa_miR636
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:28314276-28314391 [-]
Reference genome	IRGSP-1.0
Source	SRR1742988;SRR1738227
Length	23
Mature sequence(if miRNA)	94 - CGUGAGACAAAUCUUUUGAGCCU - 116
Stem-loop(if miRNA)	--        A                         G      CAU   U  U   -  A   CGUGAGAC AAUCUUUUGAGCCUAAUUAGUUCAU AUUAGC   ACG AC ACA GU A   |||||||| ||||||||||||||||||||||||| ||||||   ||| || ||| || C   GCGCUCUG UUAGAAAACUCGGAUUAAUUAGGUA UAAUUG   UGU UG UGU CA C UG        C                         G      ---   U  -   A  C
Stem-loop sequence	CGUGAGACAAAUCUUUUGAGCCUAAUUAGUUCAUGAUUAGCCAUACGUACUACAGUAACCCACAUGUGUUUGUGUUAAUGAUGGAUUAAUUAGGCUCAAAAGAUUCGUCUCGCGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT831729.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGUGC   1   ||||||||||||||||||||||| targets:455   AGGCUCAAAAGAUUUGUCUCACG   477 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117A02, full insert sequence	NA	coding protein	psRNATarget
CT837754.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGUGC   1   ||||||||||||||||||||=|* targets:1366   AGGCUCAAAAGAUUUGUCUCGCA   1388 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120A23, full insert sequence	NA	coding protein	psRNATarget
AK069221.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGUGC   1   |||||||||=||||||||||||* targets:604   AGGCUCAAAGGAUUUGUCUCACA   626 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023018E21, full insert sequence	NA	coding protein	psRNATarget
XM_015791223.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGUGC   1   |||||||||=||||||||||||* targets:1762   AGGCUCAAAGGAUUUGUCUCACA   1784 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g01970 (LOC4344187), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At1g01970(LOC4344187)	coding protein	psRNATarget
XM_015775081.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGUGC   1   ||||||||||||||*|||||||* targets:1120   AGGCUCAAAAGAUUCGUCUCACA   1142 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group methylesterase 3 (LOC4324570), mRNA	methylesterase 3(LOC4324570)	coding protein	psRNATarget
XM_015781196.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGUGC   1   ||*||=||||||||||||||=|| targets:2153   AGACUUAAAAGAUUUGUCUCGCG   2175 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group GATA transcription factor 6 (LOC4336532), mRNA	GATA transcription factor 6(LOC4336532)	coding protein	psRNATarget
AK068143.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGUGC   1   ||*=||||||||||||||||||* targets:1231   AGAUUCAAAAGAUUUGUCUCACA   1253 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013134C06, full insert sequence	NA	coding protein	psRNATarget
HI403927.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGUGC   1   ||*|||||||||||*|||||||* targets:91   AGCCUCAAAAGAUUCGUCUCACA   113 Target Full Sequence	2.5	Sequence 2052 from Patent EP2074227	NA	coding protein	psRNATarget
JB164388.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGUGC   1   ||*|||||||||||*|||||||* targets:91   AGCCUCAAAAGAUUCGUCUCACA   113 Target Full Sequence	2.5	Sequence 2052 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236057.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGUGC   1   ||*|||||||||||*|||||||* targets:91   AGCCUCAAAAGAUUCGUCUCACA   113 Target Full Sequence	2.5	Sequence 2052 from Patent EP2985353	NA	coding protein	psRNATarget
AK065982.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGUGC   1   ||*|||||||||||*|||||||* targets:2875   AGACUCAAAAGAUUCGUCUCACA   2897 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013045J05, full insert sequence	NA	coding protein	psRNATarget
XM_015780682.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGUGC   1   ****|=||*|||||||||||||| targets:964   UCUGUUAACAGAUUUGUCUCACG   986 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335414 (LOC4335414), mRNA	uncharacterized LOC4335414(LOC4335414)	coding protein	psRNATarget