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BaseInfo

ncRNA ID novel_osa_miR633
Species Oryza sativa
Class miRNA
Genome position Chr1:7314411-7314531 [+]
Reference genome IRGSP-1.0
Source SRR1742988
Length 21
Mature sequence(if miRNA) 101 - UCGGACGUCCAUUUUUUGAUC - 121
Stem-loop(if miRNA) --          A             C       C   U     A   AUUUU        AU
  UCGAAAAAUG AUGUCUGAGAUUC UCUACGU AUC CGAGU AAA     ACUCAUGG  G
  |||||||||| ||||||||||||| ||||||| ||| ||||| |||     ||||||||
  AGUUUUUUAC UGCAGGCUUUAAG AGGUGCA UAG GCUCA UUU     UGAGUACU  U
CU          C             C       U   U     A   -----        CA
Stem-loop sequence UCGAAAAAUGAAUGUCUGAGAUUCCUCUACGUCAUCUCGAGUAAAAAUUUUACUCAUGGAUGUACUCAUGAGUUUUAACUCGUGAUUACGUGGACGAAUUUCGGACGUCCAUUUUUUGAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015789578.1
ncRNA:21   CUAGUUUUUUACCUGCAGGCU   1
  ||||=||||||||||||||||
targets:1797   GAUCGAAAAAUGGACGUCCGA   1817

1.0 PREDICTED: Oryza sativa Japonica Group protein SRC2 (LOC9270916), mRNA protein SRC2(LOC9270916) coding protein psRNATarget
AK288313.1
ncRNA:21   CUAGUUUUUUACCUGCAGGCU   1
  ||*||||||||||||||=|||
targets:3550   GAACAAAAAAUGGACGUUCGA   3570

2.5 Oryza sativa Japonica Group cDNA, clone: J090021D10, full insert sequence NA coding protein psRNATarget