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BaseInfo

ncRNA ID novel_osa_miR631
Species Oryza sativa
Class miRNA
Genome position Chr4:5870264-5870418 [-]
Reference genome IRGSP-1.0
Source SRR1742988;SRR1742992;SRR1742993;SRR1849769;SRR1849771;SRR1849772;SRR1849773;SRR1849774;SRR1849775;SRR2040380;SRR2040386;SRR2040387;SRR2040392;SRR2040393;SRR2040394;SRR2040397;SRR2040398;SRR2040402;SRR1555749;SRR2040403;SRR2040405;SRR2040407;SRR2857733;SRR1556016
Length 21
Mature sequence(if miRNA) 1 - UCGAGAUACUUUUUGUUGGAC - 21
Stem-loop(if miRNA) --             CA                               A     A  UG         GUUGG    GAU
  CCAACAAAAAGUA  UCGAGGUACCGGUAUCUCACGGUACCAAAUC UUUUC AU  UUGGAUCUA     ACAA   G
  |||||||||||||  ||||||||||||||||||||||||||||||| ||||| ||  |||||||||     ||||
  GGUUGUUUUUCAU  AGCUUCAUGGCUAUGGAGUGUCAUGGUUUAG AAAGG UA  AACCUAGAU     UGUU   A
CA             AG                               C     C  GU         -----    AUA
Stem-loop sequence CCAACAAAAAGUACAUCGAGGUACCGGUAUCUCACGGUACCAAAUCAUUUUCAAUUGUUGGAUCUAGUUGGACAAGAUGAAUAUUGUUAGAUCCAAUGAUCGGAAACGAUUUGGUACUGUGAGGUAUCGGUACUUCGAGAUACUUUUUGUUGGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK063705.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||||=|||||||||||||||
targets:484   GUCCAGCAAAAAGUAUCUCGA   504

1.0 Oryza sativa Japonica Group cDNA clone:001-119-H03, full insert sequence NA coding protein psRNATarget
EF626940.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||||=|||||||||||||||
targets:990   GUCCAGCAAAAAGUAUCUCGA   1010

1.0 Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds NA coding protein psRNATarget
XM_015755547.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||||=|||||||||||||||
targets:1465   GUCCAGCAAAAAGUAUCUCGA   1485

1.0 PREDICTED: Oryza sativa Japonica Group zinc finger protein WIP2 (LOC4347420), mRNA zinc finger protein WIP2(LOC4347420) coding protein psRNATarget
XM_015779655.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  ||||||=||||||||||||||
targets:1464   GUCCAAUAAAAAGUAUCUCGA   1484

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280684 (LOC107280684), transcript variant X1, mRNA uncharacterized LOC107280684(LOC107280684) coding protein psRNATarget
JB164580.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||=||||=||||||||||||
targets:11   GUCUAACAGAAAGUAUCUCGA   31

2.5 Sequence 2244 from Patent EP2559767 NA coding protein psRNATarget
HI404119.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||=||||=||||||||||||
targets:11   GUCUAACAGAAAGUAUCUCGA   31

2.5 Sequence 2244 from Patent EP2074227 NA coding protein psRNATarget
LQ236249.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||=||||=||||||||||||
targets:11   GUCUAACAGAAAGUAUCUCGA   31

2.5 Sequence 2244 from Patent EP2985353 NA coding protein psRNATarget
XM_015755454.1
ncRNA:21   CAGGUUGUUUUU-CAUAGAGCU   1
  ||||||||||||-|||||||||
targets:994   GUCCAACAAAAAAGUAUCUCGA   1015

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346980 (LOC4346980), mRNA uncharacterized LOC4346980(LOC4346980) coding protein psRNATarget
AK241559.1
ncRNA:21   CAGGUUGUUUUU-CAUAGAGCU   1
  ||||||||||||-|||||||||
targets:781   GUCCAACAAAAAAGUAUCUCGA   802

3.0 Oryza sativa Japonica Group cDNA, clone: J065178L07, full insert sequence NA coding protein psRNATarget
HI403533.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||||||||||||||*|||||
targets:10   GUCCAACAAAAAGUACCUCGA   30

1.5 Sequence 1658 from Patent EP2074227 NA coding protein psRNATarget
LQ235663.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||||||||||||||*|||||
targets:10   GUCCAACAAAAAGUACCUCGA   30

1.5 Sequence 1658 from Patent EP2985353 NA coding protein psRNATarget
JB163994.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||||||||||||||*|||||
targets:10   GUCCAACAAAAAGUACCUCGA   30

1.5 Sequence 1658 from Patent EP2559767 NA coding protein psRNATarget
LQ236668.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  ||||||||||||*||||||||
targets:11   GUCCAACAAAAAAUAUCUCGA   31

1.5 Sequence 2663 from Patent EP2985353 NA coding protein psRNATarget
HI404538.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  ||||||||||||*||||||||
targets:11   GUCCAACAAAAAAUAUCUCGA   31

1.5 Sequence 2663 from Patent EP2074227 NA coding protein psRNATarget
JB164999.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  ||||||||||||*||||||||
targets:11   GUCCAACAAAAAAUAUCUCGA   31

1.5 Sequence 2663 from Patent EP2559767 NA coding protein psRNATarget
XM_015786123.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||||||||||||||*|||||
targets:620   GUCCAACAAAAAGUAACUCGA   640

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA uncharacterized LOC4340617(LOC4340617) coding protein psRNATarget
AK100297.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  ||||||||||||*||||||||
targets:1292   GUCCAACAAAAAUUAUCUCGA   1312

1.5 Oryza sativa Japonica Group cDNA clone:J023077B14, full insert sequence NA coding protein psRNATarget
XM_015793616.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  ||||||||||||*||||||||
targets:1467   GUCCAACAAAAAUUAUCUCGA   1487

1.5 PREDICTED: Oryza sativa Japonica Group probable auxin efflux carrier component 4 (LOC4346116), mRNA probable auxin efflux carrier component 4(LOC4346116) coding protein psRNATarget
AK287529.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||||||||||||||*|||||
targets:131   GUCCAACAAAAAGUAACUCGA   151

1.5 Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence NA coding protein psRNATarget
AK240791.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  |||||||||||||||*|||||
targets:131   GUCCAACAAAAAGUAACUCGA   151

1.5 Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence NA coding protein psRNATarget
AK108234.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  *||=|=|||||||||||||||
targets:420   AUCUAGCAAAAAGUAUCUCGA   440

2.0 Oryza sativa Japonica Group cDNA clone:002-140-G06, full insert sequence NA coding protein psRNATarget
AK103106.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  ||||||=||||||||*|||||
targets:1437   GUCCAAUAAAAAGUACCUCGA   1457

2.5 Oryza sativa Japonica Group cDNA clone:J033118O22, full insert sequence NA coding protein psRNATarget
XM_015765802.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  ||||||=||||||||*|||||
targets:1436   GUCCAAUAAAAAGUACCUCGA   1456

2.5 PREDICTED: Oryza sativa Japonica Group polygalacturonase (LOC4326679), mRNA polygalacturonase(LOC4326679) coding protein psRNATarget
XM_015790062.1
ncRNA:21   CAGGUUGUUUUUCAUAGAGCU   1
  ||=||||||||||||||*|||
targets:2278   GUUCAACAAAAAGUAUCCCGA   2298

2.5 PREDICTED: Oryza sativa Japonica Group L-type lectin-domain containing receptor kinase IV.1 (LOC9268564), mRNA L-type lectin-domain containing receptor kinase IV.1(LOC9268564) coding protein psRNATarget
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