ncRNA ID | ghb-miR169a |
Species | Gossypium herbaceum |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | NA - UAGCCAAGGAUGACUUGCCUG - NA |
Stem-loop(if miRNA) |
--UAUAGAGA      AA       A      GAU   G     U       -        A     U     -C      UGU   C A      AAU           GGAAGA  AGGUCUA CAUGAA   AAA AGUCU GUUUGGU AGCCAAGG UGACU GCCUG  ACCUAA   CCA G GGUUUU   A           ||||||  ||||||| ||||||   ||| ||||| ||||||| |||||||| ||||| |||||  ||||||   ||| | ||||||   C           CCUUCU  UCCGGAU GUACUU   UUU UCGGA CAGAUCA UCGGUUCC ACUGA CGGAC  UGGGUU   GGU C CCAAAA   A GGUUACCCCG      AC       C      ACU   G     -       A        -     -     CC      ---   - -      ACU |
Stem-loop sequence | UAUAGAGAGGAAGAAAAGGUCUAACAUGAAGAUAAAGAGUCUUGUUUGGUAGCCAAGGAUGACUUGCCUGCACCUAAUGUCCACGAGGUUUUAAUACAUCAAAAACCCUGGUUGGGUCCCAGGCAGUCACCUUGGCUAACUAGACAGGCUGUUUUCAUUCAUGCUAGGCCUCAUCUUCCGCCCCAUUGG |
1 | PMID:12554859
"New microRNAs from mouse and human"; Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T; RNA. 9:175-179(2003). |
2 | PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"; Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M, Weir DB, Choksi R, De Vita G, Frezzetti D, Trompeter HI, Hornung V, Teng G, Hartmann G, Palkovits M, Di Lauro R, Wernet P, Macino G, Rogler CE, Nagle JW, Ju J, Papavasiliou FN, Benzing T, Lichter P, Tam W, Brownstein MJ, Bosio A, Borkhardt A, Russo JJ, Sander C, Zavolan M, Tuschl T; Cell. 129:1401-1414(2007). |
3 | PMID:17616659
"Patterns of known and novel small RNAs in human cervical cancer"; Lui WO, Pourmand N, Patterson BK, Fire A; Cancer Res. 67:6031-6043(2007). |