Search result

BaseInfo

ncRNA ID	novel_osa_miR623
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:15324594-15324790 [+]
Reference genome	IRGSP-1.0
Source	SRR1742988
Length	24
Mature sequence(if miRNA)	1 - CUUGCACUGUUUGACCACUCGUAU - 24
Stem-loop(if miRNA)	--                      A                                  U                             AAUAAAA   G   CUUGCACUGUUUGACCACUCGU UUAUUCAAAAAAUUUUAGAAUUAUUAUUUUUUUU GACAUACUUUAUUAUCCAAAGUAUUUUGA       AAC A   |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||       ||| A   GAACGUGACAAACUGGUGAGCA AAUAAGUUUUUUAAAAUCUUAAUAAUAAAAAAAA CUGUAUGAAAUAAUAGGUUUCAUAAAAUU       UUG A AC                      G                                  -                             ---CGUG   A
Stem-loop sequence	CUUGCACUGUUUGACCACUCGUAUUAUUCAAAAAAUUUUAGAAUUAUUAUUUUUUUUUGACAUACUUUAUUAUCCAAAGUAUUUUGAAAUAAAAAACGAAAAGUUGUGCUUAAAAUACUUUGGAUAAUAAAGUAUGUCAAAAAAAAUAAUAAUUCUAAAAUUUUUUGAAUAAGACGAGUGGUCAAACAGUGCAAGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837708.1	ncRNA:24   UAUGCUCACCAGUUUGUCACGUUC   1   |*|||||||||||||||||||||| targets:666   AGACGAGUGGUCAAACAGUGCAAG   689 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA220M04, full insert sequence	NA	coding protein	psRNATarget
AK068624.1	ncRNA:24   UAUGCUCACCAGUUUGUCACGUUC   1   |*|||||||||||||||||||||| targets:183   AGACGAGUGGUCAAACAGUGCAAG   206 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013153F11, full insert sequence	NA	coding protein	psRNATarget
AK288595.1	ncRNA:24   UAUGCUCACCAGUUUGUCACGUUC   1   |*||||||||||||||=||||||| targets:807   AGACGAGUGGUCAAACGGUGCAAG   830 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090051J16, full insert sequence	NA	coding protein	psRNATarget
XM_015790568.1	ncRNA:24   UAUGCUCACCAGUUUGUCACGUUC   1   |*||||||||||||||=||||||| targets:868   AGACGAGUGGUCAAACGGUGCAAG   891 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277036 (LOC107277036), mRNA	uncharacterized LOC107277036(Os07g0616850)	coding protein	psRNATarget
AK289150.1	ncRNA:24   UAUGCUCACCAGUUUGUCACGUUC   1   |*|||||||||=|||||||||||| targets:2727   AGACGAGUGGUUAAACAGUGCAAG   2750 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090099O03, full insert sequence	NA	coding protein	psRNATarget
AK289013.1	ncRNA:24   UAUGCUCACCAGUUUGUCACGUUC   1   |*|||||||||=|||||||||||| targets:1525   AGACGAGUGGUUAAACAGUGCAAG   1548 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence	NA	coding protein	psRNATarget
CT837645.1	ncRNA:24   UAUGCUCACCAGUUUGUCACGUUC   1   |*||||*||||||||||||||||| targets:603   AGACGAAUGGUCAAACAGUGCAAG   626 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063B15, full insert sequence	NA	coding protein	psRNATarget
AK106768.1	ncRNA:24   UAUGCUCACCAGUUUGUCACGUUC   1   |*|||||||||||||||*|||||| targets:292   AGACGAGUGGUCAAACAAUGCAAG   315 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-115-F05, full insert sequence	NA	coding protein	psRNATarget
AK288846.1	ncRNA:24   UAUGCUCACCAGUUUGUCACGUUC   1   |*|||||||*|||||||||||||| targets:55   AGACGAGUGAUCAAACAGUGCAAG   78 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090075E22, full insert sequence	NA	coding protein	psRNATarget
AK288203.1	ncRNA:24   UAUGCUCACCAGUUUGUCACGUUC   1   |*||||*||||||||||||||||| targets:1701   AGACGAAUGGUCAAACAGUGCAAG   1724 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090008K12, full insert sequence	NA	coding protein	psRNATarget
AK111668.1	ncRNA:24   UAUGCUCACCAGUUUGUCACGUUC   1   |*|||||||||||||||||*|||| targets:4390   AGACGAGUGGUCAAACAGUACAAG   4413 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013153P21, full insert sequence	NA	coding protein	psRNATarget
JB164550.1	ncRNA:24   UAUGCUCACCAGUUUGUCACGUUC   1   |*||||*|||||||||||||=||| targets:150   AGACGAAUGGUCAAACAGUGUAAG   173 Target Full Sequence	2.5	Sequence 2214 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236219.1	ncRNA:24   UAUGCUCACCAGUUUGUCACGUUC   1   |*||||*|||||||||||||=||| targets:150   AGACGAAUGGUCAAACAGUGUAAG   173 Target Full Sequence	2.5	Sequence 2214 from Patent EP2985353	NA	coding protein	psRNATarget
HI404089.1	ncRNA:24   UAUGCUCACCAGUUUGUCACGUUC   1   |*||||*|||||||||||||=||| targets:150   AGACGAAUGGUCAAACAGUGUAAG   173 Target Full Sequence	2.5	Sequence 2214 from Patent EP2074227	NA	coding protein	psRNATarget
AK065951.1	ncRNA:24   UAUGCUCACCAGUUUGUCACGUUC   1   |*|||||||||||||||*|||||* targets:1433   AAACGAGUGGUCAAACAAUGCAAC   1456 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013045C05, full insert sequence	NA	coding protein	psRNATarget
AK066510.1	ncRNA:24   UAUGCUCACCAGUUUGUCACGUUC   1   |*||*|*||||||||||||||||| targets:1422   AGACAAAUGGUCAAACAGUGCAAG   1445 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013068L16, full insert sequence	NA	coding protein	psRNATarget
LQ236050.1	ncRNA:24   UAUGCUCACCAGUUUGUCACGUUC   1   |||--||||||||||||*|||||* targets:139   AUA--AGUGGUCAAACAAUGCAAA   160 Target Full Sequence	2.5	Sequence 2045 from Patent EP2985353	NA	coding protein	psRNATarget
HI403920.1	ncRNA:24   UAUGCUCACCAGUUUGUCACGUUC   1   |||--||||||||||||*|||||* targets:139   AUA--AGUGGUCAAACAAUGCAAA   160 Target Full Sequence	2.5	Sequence 2045 from Patent EP2074227	NA	coding protein	psRNATarget
JB164381.1	ncRNA:24   UAUGCUCACCAGUUUGUCACGUUC   1   |||--||||||||||||*|||||* targets:139   AUA--AGUGGUCAAACAAUGCAAA   160 Target Full Sequence	2.5	Sequence 2045 from Patent EP2559767	NA	coding protein	psRNATarget