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BaseInfo

ncRNA ID	novel_osa_miR622
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:8345464-8345576 [+]
Reference genome	IRGSP-1.0
Source	SRR1742988;SRR2040407
Length	24
Mature sequence(if miRNA)	1 - CGGUUAAACGUUAGACACGGAAAC - 24
Stem-loop(if miRNA)	--             G   C    ACCCACAA     U     U     -CAUA  UA   CGGUUAAACGUUA ACA GGAA        CUGCA UUAUA UGGGA     GG  U   ||||||||||||| ||| ||||        ||||| ||||| |||||     ||   GCCAGUUUGCAAU UGU CCUU        GACGU GAUAU ACCCU     CC  A UU             A   A    --AAUAUC     C     U     ACCUA  UC
Stem-loop sequence	CGGUUAAACGUUAGACACGGAAACCCACAACUGCAUUUAUAUUGGGACAUAGGUAUACUCCAUCCAUCCCAUUAUAGCUGCAGCUAUAAUUCCAUGUAUAACGUUUGACCGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT828091.1	ncRNA:24   CAAAGGCACAGAUUGCAAAUUGGC   1   *||||||||||||||||||=|||| targets:1568   AUUUCCGUGUCUAACGUUUGACCG   1591 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128N06, full insert sequence	NA	coding protein	psRNATarget
LQ236018.1	ncRNA:24   CAAAGGCACAGAUUGCAAAUUGGC   1   ||||=|||||=||||||||=|||| targets:10   GUUUUCGUGUUUAACGUUUGACCG   33 Target Full Sequence	2.5	Sequence 2013 from Patent EP2985353	NA	coding protein	psRNATarget
JB164349.1	ncRNA:24   CAAAGGCACAGAUUGCAAAUUGGC   1   ||||=|||||=||||||||=|||| targets:10   GUUUUCGUGUUUAACGUUUGACCG   33 Target Full Sequence	2.5	Sequence 2013 from Patent EP2559767	NA	coding protein	psRNATarget
HI403888.1	ncRNA:24   CAAAGGCACAGAUUGCAAAUUGGC   1   ||||=|||||=||||||||=|||| targets:10   GUUUUCGUGUUUAACGUUUGACCG   33 Target Full Sequence	2.5	Sequence 2013 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015776704.1	ncRNA:24   CAAAGGCACAGAUUGCAAAUUGGC   1   |||*|||||||||||||||=|||| targets:1595   GUUGCCGUGUCUAACGUUUGACCG   1618 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X1, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776705.1	ncRNA:24   CAAAGGCACAGAUUGCAAAUUGGC   1   |||*|||||||||||||||=|||| targets:1589   GUUGCCGUGUCUAACGUUUGACCG   1612 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X2, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
XM_015776706.1	ncRNA:24   CAAAGGCACAGAUUGCAAAUUGGC   1   |||*|||||||||||||||=|||| targets:1583   GUUGCCGUGUCUAACGUUUGACCG   1606 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group glucan endo-1,3-beta-glucosidase 7 (LOC4332132), transcript variant X3, mRNA	glucan endo-1,3-beta-glucosidase 7(LOC4332132)	coding protein	psRNATarget
AK242028.1	ncRNA:24   CAAAGGCACAGAUUGCAAAUUGGC   1   |||*|||||||||||||||=|||| targets:1472   GUUGCCGUGUCUAACGUUUGACCG   1495 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075115C11, full insert sequence	NA	coding protein	psRNATarget
AK064197.1	ncRNA:24   CAAAGGCACAGAUUGCAAAUUGGC   1   *|*|=||||||||||||||=|||| targets:888   AUAUUCGUGUCUAACGUUUGACCG   911 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-104-D06, full insert sequence	NA	coding protein	psRNATarget
AK288811.1	ncRNA:24   CAAAGGCACAGAUUGCAAAUUGGC   1   ***||||||||||||||||=|||* targets:203   AAAUCCGUGUCUAACGUUUGACCA   226 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090072B06, full insert sequence	NA	coding protein	psRNATarget