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BaseInfo

ncRNA ID	novel_osa_miR619
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:18029791-18029953 [-]
Reference genome	IRGSP-1.0
Source	SRR1742988
Length	23
Mature sequence(if miRNA)	1 - CGACGGAUUCUGUAAUUAGUUUU - 23
Stem-loop(if miRNA)	--           U  A   -   CU   UU C    C    C               C  CAUGAU       -   GG   U   AACUAAUUGCA AG UUG CGA  AAU  A GAGA AAAU UUUUAAGCCUAAUUG UC      UUGACAA UGU  UGC A   ||||||||||| || ||| |||  |||  | |||| |||| ||||||||||||||| ||      ||||||| |||  |||   UUGAUUAAUGU UU GGC GCU  UUG  U CUCU UUUA AAAAUUCGGAUUAAU AG      AAUUGUU ACA  AUG C UU           C  A   A   AU   GC -    A    A               U  -ACAGU       U   -A   A
Stem-loop sequence	AACUAAUUGCAUAGAUUGCGACUAAUUUACGAGACAAAUCUUUUAAGCCUAAUUGCUCCAUGAUUUGACAAUGUGGUGCUACAGUAAACAUUUGUUAAUGACAGAUUAAUUAGGCUUAAAAAAUUUAUCUCUCGGUUUAUCGACGGAUUCUGUAAUUAGUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK120109.1	ncRNA:23   UUUUGAUUAAUGUCUUAGGCAGC   1   ||||||||||||||||||||||* targets:1847   AAAACUAAUUACAGAAUCCGUCA   1869 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013023O17, full insert sequence	NA	coding protein	psRNATarget
AK067087.1	ncRNA:23   UUUUGAUUAAUGUCUUAGGCAGC   1   ||||||||||||||||||||||* targets:1846   AAAACUAAUUACAGAAUCCGUCA   1868 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013095A19, full insert sequence	NA	coding protein	psRNATarget
AK288647.1	ncRNA:23   UUUUGAUUAAUGUCUUAGGCAGC   1   ||||||||||||||||||||||* targets:1982   AAAACUAAUUACAGAAUCCGUCA   2004 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090056K16, full insert sequence	NA	coding protein	psRNATarget
AK289087.1	ncRNA:23   UUUUGAUUAAUGUCUUAGGCAGC   1   ||||||||||||||||||=|||* targets:6   AAAACUAAUUACAGAAUCUGUCA   28 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090095K03, full insert sequence	NA	coding protein	psRNATarget
AK072161.1	ncRNA:23   UUUUGAUUAAUGUCUUAGGCAGC   1   ||||||||||||||||||||*|* targets:1003   AAAACUAAUUACAGAAUCCGGCA   1025 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013132P06, full insert sequence	NA	coding protein	psRNATarget
XM_015784558.1	ncRNA:23   UUUUGAUUAAUGUCUUAGGCAGC   1   ||||||||||||||*|||||||* targets:4063   AAAACUAAUUACAGUAUCCGUCA   4085 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9270232 (LOC9270232), mRNA	uncharacterized LOC9270232(LOC9270232)	coding protein	psRNATarget