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BaseInfo

ncRNA ID	novel_osa_miR608
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:26326957-26327023 [-]
Reference genome	IRGSP-1.0
Source	SRR1742988;SRR2040396;SRR1555749;SRR2098557;SRR2099428;SRR4407954;SRR1556016
Length	21
Mature sequence(if miRNA)	1 - CGUUCGCGUACGGCGUCGGCG - 21
Stem-loop(if miRNA)	--                U    --      -  G   CCGACGCCGUACGCGA ACGA  GCGAGG CG G   |||||||||||||||| ||||  |||||| || C   GGCUGCGGCAUGCGCU UGCU  CGCUCC GC C GC                -    AU      A  G
Stem-loop sequence	CCGACGCCGUACGCGAUACGAGCGAGGCGGGCCGCGACCUCGCUAUCGUUCGCGUACGGCGUCGGCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403572.1	ncRNA:21   GCGGCUGCGGCAUGCGCUUGC   1   ||||||||||||||||||||| targets:24   CGCCGACGCCGUACGCGAACG   44 Target Full Sequence	0.0	Sequence 1697 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235702.1	ncRNA:21   GCGGCUGCGGCAUGCGCUUGC   1   ||||||||||||||||||||| targets:24   CGCCGACGCCGUACGCGAACG   44 Target Full Sequence	0.0	Sequence 1697 from Patent EP2985353	NA	coding protein	psRNATarget
JB164033.1	ncRNA:21   GCGGCUGCGGCAUGCGCUUGC   1   ||||||||||||||||||||| targets:24   CGCCGACGCCGUACGCGAACG   44 Target Full Sequence	0.0	Sequence 1697 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015795357.1	ncRNA:21   GCGGCUGCGGCAUGCGCUUGC   1   |||||=|||||||||=||||| targets:769   CGCCGGCGCCGUACGUGAACG   789 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4345917 (LOC4345917), mRNA	uncharacterized LOC4345917(LOC4345917)	coding protein	psRNATarget
AK110788.1	ncRNA:21   GCGGCUGCGGCAUGCGCUUGC   1   |||||=|||||||||=||||| targets:521   CGCCGGCGCCGUACGUGAACG   541 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-171-C09, full insert sequence	NA	coding protein	psRNATarget
XM_015794272.1	ncRNA:21   GCGGCUGCGGCAUGCGCUUGC   1   |||*|||*||||||||||||| targets:1   CGCAGACACCGUACGCGAACG   21 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group WPP domain-interacting protein 3 (LOC4345933), transcript variant X1, mRNA	WPP domain-interacting protein 3(LOC4345933)	coding protein	psRNATarget
XM_015794273.1	ncRNA:21   GCGGCUGCGGCAUGCGCUUGC   1   |||*|||*||||||||||||| targets:4   CGCAGACACCGUACGCGAACG   24 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group WPP domain-interacting protein 3 (LOC4345933), transcript variant X2, mRNA	WPP domain-interacting protein 3(LOC4345933)	coding protein	psRNATarget
XM_015782482.1	ncRNA:21   GCGGCUGCGGCAUGCGCUUGC   1   |||||*||||||*|||||||| targets:736   CGCCGCCGCCGUUCGCGAACG   756 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor TCP13 (LOC4339298), mRNA	transcription factor TCP13(LOC4339298)	coding protein	psRNATarget
AK069938.1	ncRNA:21   GCGGCUGCGGCAUGCGCUUGC   1   |||||*||||||*|||||||| targets:702   CGCCGCCGCCGUUCGCGAACG   722 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023038I07, full insert sequence	NA	coding protein	psRNATarget
CT832598.1	ncRNA:21   GCGGCUGCGGCAUGCGCUUGC   1   |||||*||||||*|||||||| targets:670   CGCCGCCGCCGUUCGCGAACG   690 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN019K07, full insert sequence	NA	coding protein	psRNATarget
GQ229484.1	ncRNA:21   GCGGCUGCGGCAUGCGCUUGC   1   |||||*||||||*|||||||| targets:401   CGCCGCCGCCGUUCGCGAACG   421 Target Full Sequence	2.5	Oryza sativa Japonica Group TCP transcription factor (TCP11) mRNA, complete cds	NA	coding protein	psRNATarget