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BaseInfo

ncRNA ID	novel_osa_miR604
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:4409571-4409727 [+]
Reference genome	IRGSP-1.0
Source	SRR1742988;SRR1742992;SRR1849769;SRR1849773;SRR1849774;SRR2040381;SRR2040382;SRR2040384;SRR2040386;SRR2040388;SRR2040392;SRR2040394;SRR2040395;SRR2040396;SRR2040397;SRR2040398;SRR2040400;SRR2040402;SRR2040404;SRR2040407;SRR2040410;SRR2040411;SRR3123645;SRR3123646;SRR3123650;SRR5351738;SRR1738209;SRR1738223;SRR1738226;SRR1738228;SRR1738239
Length	24
Mature sequence(if miRNA)	134 - AAGAUGAACGGUCAAAUAUUGGAC - 157
Stem-loop(if miRNA)	--    CG   A  UA  UG      A     --------------UUUUUUUU  UAAUUAGUAUUUUCAUUGUUGUUAGAUGA   CCAA  UUU AU  UU  UCUUAU UGAAA                      UA                             U   ||||  ||| ||  ||  |||||| |||||                      ||                             A   GGUU  AAA UG  AA  AGAAUA AUUUU                      CU                             A CA    AU   C  GC  GU      A     UAUAUAUUUUUUUUUAAUUUUU  GUUCAGUGCGUAUUUCAUAAUUAGUACAA
Stem-loop sequence	CCAACGUUUAAUUAUUUGUCUUAUAUGAAAUUUUUUUUUAUAAUUAGUAUUUUCAUUGUUGUUAGAUGAUAAAACAUGAUUAAUACUUUAUGCGUGACUUGUCUUUUUAAUUUUUUUUUAUAUAUUUUUAAAUAAGAUGAACGGUCAAAUAUUGGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015779567.1	ncRNA:24   CAGGUUAUAAACUGGCAAGUAGAA   1   ||||||*||||||||||||=|||| targets:1946   GUCCAACAUUUGACCGUUCGUCUU   1969 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group beta-fructofuranosidase, insoluble isoenzyme 3 (LOC4335789), mRNA	beta-fructofuranosidase, insoluble isoenzyme 3(LOC4335789)	coding protein	psRNATarget
AK120779.1	ncRNA:24   CAGGUUAUAAACUGGCAAGUAGAA   1   ||||||*||||||||||||=|||| targets:1953   GUCCAACAUUUGACCGUUCGUCUU   1976 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023009M11, full insert sequence	NA	coding protein	psRNATarget
AK288164.1	ncRNA:24   CAGGUUAUAAACUGGCAAGUAGAA   1   |||=||*||||||||||*|||||| targets:1681   GUCUAACAUUUGACCGUCCAUCUU   1704 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090002E02, full insert sequence	NA	coding protein	psRNATarget
AK288202.1	ncRNA:24   CAGGUUAUAAACUGGCAAGUAGAA   1   |||=||*||||||||||*|||||| targets:1681   GUCUAACAUUUGACCGUCCAUCUU   1704 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090008J03, full insert sequence	NA	coding protein	psRNATarget
AK288575.1	ncRNA:24   CAGGUUAUAAACUGGCAAGUAGAA   1   ****|||||||||||||||=|||| targets:3561   UAAAAAUAUUUGACCGUUCGUCUU   3584 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090049A09, full insert sequence	NA	coding protein	psRNATarget
AK288782.1	ncRNA:24   CAGGUUAUAAACUGGCAAGUAGAA   1   **|*|||=|||||||||||=|||| targets:1076   AGCAAAUGUUUGACCGUUCGUCUU   1099 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090069D21, full insert sequence	NA	coding protein	psRNATarget
AK288960.1	ncRNA:24   CAGGUUAUAAACUGGCAAGUAGAA   1   ****|||=|||||||||||=|||| targets:240   UAAAAAUGUUUGACCGUUCGUCUU   263 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090084F05, full insert sequence	NA	coding protein	psRNATarget
AK242125.1	ncRNA:24   CAGGUUAUAAACUGGCAAGUAGAA   1   ****|||=|||||||||||=|||| targets:1860   AAAAAAUGUUUGACCGUUCGUCUU   1883 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075148C03, full insert sequence	NA	coding protein	psRNATarget
XM_015792994.1	ncRNA:24   CAGGUUAUAAACUGGCAAGUAGAA   1   ****|||=|||||||||||=|||| targets:1863   AAAAAAUGUUUGACCGUUCGUCUU   1886 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative serine/threonine-protein kinase-like protein CCR3 (LOC4345414), mRNA	putative serine/threonine-protein kinase-like protein CCR3(LOC4345414)	coding protein	psRNATarget