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BaseInfo

ncRNA ID novel_osa_miR600
Species Oryza sativa
Class miRNA
Genome position Chr12:3477656-3477756 [-]
Reference genome IRGSP-1.0
Source SRR1742988;SRR1742990;SRR1742992;SRR1742993;SRR1742994;SRR1742995;SRR1742996;SRR4407958;SRR5049789;SRR5049792;SRR1738209;SRR1738210;SRR1738222;SRR1738223;SRR1738224
Length 24
Mature sequence(if miRNA) 1 - AUCUUAAUAUAGAGUGGUAUUGGA - 24
Stem-loop(if miRNA) --AU     -              C   UU   UUA   -       U  UC
    AUGCC CUUUAUAUUAAGAU UUA  GCA   AAG UAUAUUA GG  G
    ||||| |||||||||||||| |||  |||   ||| ||||||| ||
    UAUGG GAGAUAUAAUUCUA AAU  UGU   UUC AUAUAGU CU  U
AGGU     U              U   UU   UUG   U       -  GU
Stem-loop sequence AUAUGCCCUUUAUAUUAAGAUCUUAUUGCAUUAAAGUAUAUUAUGGUCGUUGUCUGAUAUAUCUUGUUUGUUUUAAUAUCUUAAUAUAGAGUGGUAUUGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK064569.1
ncRNA:24   AGGUUAUGGUGAGAUAUAAUUCUA   1
  |||=||||=|||||||||||||||
targets:126   UCCGAUACUACUCUAUAUUAAGAU   149

1.0 Oryza sativa Japonica Group cDNA clone:002-112-D07, full insert sequence NA coding protein psRNATarget
AK288616.1
ncRNA:24   AGGUUAUGGUGAGAUAUAAUUCUA   1
  |||=||||*|||||||||||||||
targets:2180   UCCGAUACGACUCUAUAUUAAGAU   2203

1.0 Oryza sativa Japonica Group cDNA, clone: J090054A10, full insert sequence NA coding protein psRNATarget
AK288229.1
ncRNA:24   AGGUUAUGGUGAGAUAUAAUUCUA   1
  ||==|||=||||||*|||||||||
targets:93   UCUGAUAUCACUCUUUAUUAAGAU   116

2.5 Oryza sativa Japonica Group cDNA, clone: J090012M05, full insert sequence NA coding protein psRNATarget