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BaseInfo

ncRNA ID novel_osa_miR599
Species Oryza sativa
Class miRNA
Genome position Chr12:8127877-8128006 [-]
Reference genome IRGSP-1.0
Source SRR1742988
Length 24
Mature sequence(if miRNA) 1 - CUAUUUUUCGAUCCAACGGUAGUU - 24
Stem-loop(if miRNA) --             -             C  G   C   A     ---   -  U        A U
  UUACCGUUGGAUC AAAAAUAGAUGUC GA AUU GUC AUGUC   ACG GU AAAAUUUU C C
  ||||||||||||| ||||||||||||| || ||| ||| |||||   ||| || |||||||| | A
  GAUGGCAACCUAG UUUUUAUCUGCAG CU UAA CAG UACAG   UGC CA UUUUAAAA G U
UU             C             A  A   A   A     UAG   U  U        C A
Stem-loop sequence UUACCGUUGGAUCAAAAAUAGAUGUCCGAGAUUCGUCAAUGUCACGGUUAAAAUUUUACUCAUAGCAAAAUUUUUACUCGUGAUGACAUAGACAAAUAUCAGACGUCUAUUUUUCGAUCCAACGGUAGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015792283.1
ncRNA:24   UUGAUGGCAACCUAGCUUUUUAUC   1
  |||||==||||||||||||||||*
targets:1087   AACUAUUGUUGGAUCGAAAAAUAA   1110

3.0 PREDICTED: Oryza sativa Japonica Group momilactone A synthase-like (LOC4344208), transcript variant X1, mRNA momilactone A synthase-like(LOC4344208) coding protein psRNATarget
XM_015792284.1
ncRNA:24   UUGAUGGCAACCUAGCUUUUUAUC   1
  |||||==||||||||||||||||*
targets:1096   AACUAUUGUUGGAUCGAAAAAUAA   1119

3.0 PREDICTED: Oryza sativa Japonica Group momilactone A synthase-like (LOC4344208), transcript variant X2, mRNA momilactone A synthase-like(LOC4344208) coding protein psRNATarget
XM_015791743.1
ncRNA:24   UUGA-UGGCAACCUAGCUUUUUAUC   1
  ||=|-||=||||||||*||||||||
targets:1644   AAUUUACUGUUGGAUCUAAAAAUAG   1668

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342287 (LOC4342287), mRNA uncharacterized LOC4342287(LOC4342287) coding protein psRNATarget
AK064136.1
ncRNA:24   UUGA-UGGCAACCUAGCUUUUUAUC   1
  ||=|-||=||||||||*||||||||
targets:1716   AAUUUACUGUUGGAUCUAAAAAUAG   1740

2.5 Oryza sativa Japonica Group cDNA clone:002-102-G06, full insert sequence NA coding protein psRNATarget
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