ncRNA ID | novel_osa_miR597 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr1:16230350-16230476 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR1742988;SRR1742989;SRR1742990;SRR1742991;SRR2040392;SRR3234044;SRR5049781;SRR1738216;SRR1738219;SRR1738221 |
Length | 24 |
Mature sequence(if miRNA) | 104 - ACUAUUACUUUAUCGGAUGAAGAA - 127 |
Stem-loop(if miRNA) |
--G         C        UU      G      U     A         C  AG      U    UUCAUCCGA AAAGUGAU  GUAACA UGUUCA AAAAU UACAUAUCU UU  AUAGUU A    ||||||||| ||||||||  |||||| |||||| ||||| ||||||||| ||  ||||||    AAGUAGGCU UUUCAUUA  CAUUGU ACAAGU UUUUA AUGUAUAGA AG  UAUCAA U AAG         A        -U      A      U     A         A  AA      A |
Stem-loop sequence | GUUCAUCCGACAAAGUGAUUUGUAACAGUGUUCAUAAAAUAUACAUAUCUCUUAGAUAGUUUAUAAACUAUAAGAAAGAUAUGUAAAUUUUUUGAACAAUGUUACUAUUACUUUAUCGGAUGAAGAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK106710.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:002-114-F03, full insert sequence | NA | coding protein | psRNATarget |