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BaseInfo

ncRNA ID novel_osa_miR597
Species Oryza sativa
Class miRNA
Genome position Chr1:16230350-16230476 [+]
Reference genome IRGSP-1.0
Source SRR1742988;SRR1742989;SRR1742990;SRR1742991;SRR2040392;SRR3234044;SRR5049781;SRR1738216;SRR1738219;SRR1738221
Length 24
Mature sequence(if miRNA) 104 - ACUAUUACUUUAUCGGAUGAAGAA - 127
Stem-loop(if miRNA) --G         C        UU      G      U     A         C  AG      U
   UUCAUCCGA AAAGUGAU  GUAACA UGUUCA AAAAU UACAUAUCU UU  AUAGUU A
   ||||||||| ||||||||  |||||| |||||| ||||| ||||||||| ||  ||||||
   AAGUAGGCU UUUCAUUA  CAUUGU ACAAGU UUUUA AUGUAUAGA AG  UAUCAA U
AAG         A        -U      A      U     A         A  AA      A
Stem-loop sequence GUUCAUCCGACAAAGUGAUUUGUAACAGUGUUCAUAAAAUAUACAUAUCUCUUAGAUAGUUUAUAAACUAUAAGAAAGAUAUGUAAAUUUUUUGAACAAUGUUACUAUUACUUUAUCGGAUGAAGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK106710.1
ncRNA:24   AAGAAGUAGGCUAUUUCAUUAUCA   1
  |****||||=|||=||||||||||
targets:482   UGAAACAUCUGAUGAAGUAAUAGU   505

2.5 Oryza sativa Japonica Group cDNA clone:002-114-F03, full insert sequence NA coding protein psRNATarget