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BaseInfo

ncRNA ID	novel_osa_miR594
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:19852334-19852445 [-]
Reference genome	IRGSP-1.0
Source	SRR1742988
Length	24
Mature sequence(if miRNA)	89 - UCUGCGAGACGAAUUUUUAAGCCU - 112
Stem-loop(if miRNA)	--UCU               -   C       AUCUAUAAU    AAAAAUUUACUAUAG      GCGAGACGAAUUUUU AAG CUAAUUA         UAUG               C      ||||||||||||||| ||| |||||||         ||||               A      UGCUCUGCUUAGAAA UUC GAUUAAU         CGGU               U UUAAG               A   A       --------G    ACUAAACUGUUAUAC
Stem-loop sequence	UCUGCGAGACGAAUUUUUAAGCCUAAUUAAUCUAUAAUUAUGAAAAAUUUACUAUAGCAUCAUAUUGUCAAAUCAUGGCGUAAUUAGACUUAAAAGAUUCGUCUCGUGAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK242281.1	ncRNA:24   UCCGAAUUUUU-AAGCAGAGCGUCU   1   |||||||||||-||||||||||||| targets:1747   AGGCUUAAAAAAUUCGUCUCGCAGA   1771 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J075189D01, full insert sequence	NA	coding protein	psRNATarget
AK288184.1	ncRNA:24   UCCGAAUU-UUUAAGCAGAGCGUCU   1   ||||||||-|||||||||||||||* targets:954   AGGCUUAAUAAAUUCGUCUCGCAGU   978 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090005P17, full insert sequence	NA	coding protein	psRNATarget
AK119775.1	ncRNA:24   UCCGAAUU-UUUAAGCAGAGCGUCU   1   ||||||||-|||||||||||||||* targets:835   AGGCUUAAUAAAUUCGUCUCGCAGU   859 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-172-G07, full insert sequence	NA	coding protein	psRNATarget
AK288843.1	ncRNA:24   UCCGAAUU-UUUAAGCAGAGCGUCU   1   ||||||||-|||||||||||||||* targets:2210   AGGCUUAAUAAAUUCGUCUCGCAGU   2234 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090074J10, full insert sequence	NA	coding protein	psRNATarget
XM_015780200.1	ncRNA:24   UCCGAAUU-UUUAAGCAGAGCGUCU   1   ||||||||-|||||||||||||||* targets:38   AGGCUUAAUAAAUUCGUCUCGCAGU   62 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g22150, chloroplastic (LOC4336891), mRNA	pentatricopeptide repeat-containing protein At3g22150, chloroplastic(LOC4336891)	coding protein	psRNATarget
CT837782.1	ncRNA:24   UCCGAAUU-UUUAAGCAGAGCGUCU   1   |||=||||-|||||||||||||||* targets:1521   AGGUUUAAUAAAUUCGUCUCGCAGU   1545 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244J06, full insert sequence	NA	coding protein	psRNATarget
AK288471.1	ncRNA:24   UCCGAAUU-UUUAAGCAGAGCGUCU   1   =|||||||-|||||||||||||||* targets:1770   GGGCUUAAUAAAUUCGUCUCGCAGU   1794 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090037K14, full insert sequence	NA	coding protein	psRNATarget
CT837862.1	ncRNA:24   UCCGAAUU-UUUAAGCAGAGCGUCU   1   ||||*|||-|||||||||||||||* targets:903   AGGCCUAAUAAAUUCGUCUCGCAGU   927 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA123J02, full insert sequence	NA	coding protein	psRNATarget
AK067578.1	ncRNA:24   UCCGAAUU-UUUAAGCAGAGCGUCU   1   ||*|||||-|||||||||||||||* targets:1757   AGACUUAAUAAAUUCGUCUCGCAGU   1781 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence	NA	coding protein	psRNATarget
XM_015769825.1	ncRNA:24   UCCGAAUU-UUUAAGCAGAGCGUCU   1   |*||||||-|||||||||||||||* targets:714   AAGCUUAAUAAAUUCGUCUCGCAGU   738 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein At4g30940 (LOC4329965), mRNA	BTB/POZ domain-containing protein At4g30940(LOC4329965)	coding protein	psRNATarget
AK288216.1	ncRNA:24   UCCGAAUU-UUUAAGCAGAGCGUCU   1   |*||||||-|||||||||||||||* targets:719   AAGCUUAAUAAAUUCGUCUCGCAGU   743 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090011C22, full insert sequence	NA	coding protein	psRNATarget