Search result

BaseInfo

ncRNA ID novel_osa_miR593
Species Oryza sativa
Class miRNA
Genome position Chr11:13520690-13520804 [-]
Reference genome IRGSP-1.0
Source SRR1555746;SRR1555747;SRR1555749;SRR2097778;SRR2097779;SRR2098557;SRR2098560;SRR2098822;SRR2099567;SRR2099568;SRR2099745;SRR1556014;SRR4407775;SRR4407779;SRR4407953;SRR4407954;SRR4407955;SRR4407956;SRR1556016;SRR4407957;SRR4407958;SRR4407959;SRR4407960;SRR4407961;SRR4407962;SRR1556020
Length 24
Mature sequence(if miRNA) 1 - AAUGUUACUAUUACUUUGUCGGAU - 24
Stem-loop(if miRNA) --  A          UU           CACAAAAUG  C         A       U
  CC ACAAAGUGAU  GUAACAUUAUU         UA AUAUCUCUU UAUAGUU A
  || ||||||||||  |||||||||||         || ||||||||| |||||||
  GG UGUUUCAUUA  CAUUGUAAUAA         AU UAUAGAGAG AUAUCAA U
UA  C          -U           AUAUUUCAA  A         A       A
Stem-loop sequence CCAACAAAGUGAUUUGUAACAUUAUUCACAAAAUGUACAUAUCUCUUAUAUAGUUUAUAAACUAUAAGAGAGAUAUAUAAACUUUAUAAAUAAUGUUACUAUUACUUUGUCGGAU