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BaseInfo

ncRNA ID	novel_osa_miR589
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:23473646-23473811 [+]
Reference genome	IRGSP-1.0
Source	SRR1742988
Length	24
Mature sequence(if miRNA)	1 - UUUUAUCAACGUUUGACCAUUCGU - 24
Stem-loop(if miRNA)	--       -         C                   U         A   AAAAA       ----------G   UGCUUGAAGAAC   UUUUAUC AACGUUUGA CAUUCGUUUUAUUUAAAAA UUUGUGUAA UAU     UAUUUAU           UCA            A   ||||||| ||||||||| ||||||||||||||||||| ||||||||| |||     |||||||           |||   AAAAUAG UUGCAAACU GUAAGCAGAAUAAAUUUUU AAAUACAUU AUA     GUAAAUA           AAC            U GA       G         A                   U         A   -----       AAAUAAUACUC   UAAGCAGUAGUU
Stem-loop sequence	UUUUAUCAACGUUUGACCAUUCGUUUUAUUUAAAAAUUUUGUGUAAAUAUAAAAAUAUUUAUGUCAUGCUUGAAGAACAUUUGAUGACGAAUCAACUCAUAAUAAAAUAAAUGAUAAUUACAUAAAUUUUUUAAAUAAGACGAAUGAUCAAACGUUGGAUAAAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT830705.1	ncRNA:24   UGCUUACCAGUUUGCAACUA-UUUU   1   ||||||||||||||||||||-|||| targets:377   ACGAAUGGUCAAACGUUGAUUAAAA   401 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI024N07, full insert sequence	NA	coding protein	psRNATarget
HI404107.1	ncRNA:24   UGCUUACCAGUUUGCAACUA-UUUU   1   ||||=|||||||||||||||-|||| targets:143   ACGAGUGGUCAAACGUUGAUUAAAA   167 Target Full Sequence	3.0	Sequence 2232 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236237.1	ncRNA:24   UGCUUACCAGUUUGCAACUA-UUUU   1   ||||=|||||||||||||||-|||| targets:143   ACGAGUGGUCAAACGUUGAUUAAAA   167 Target Full Sequence	3.0	Sequence 2232 from Patent EP2985353	NA	coding protein	psRNATarget
JB164568.1	ncRNA:24   UGCUUACCAGUUUGCAACUA-UUUU   1   ||||=|||||||||||||||-|||| targets:143   ACGAGUGGUCAAACGUUGAUUAAAA   167 Target Full Sequence	3.0	Sequence 2232 from Patent EP2559767	NA	coding protein	psRNATarget
AK241906.1	ncRNA:24   UGCUUACCAGUUUGCAACUAUUUU   1   |||||||||||||*|||||||||| targets:1406   ACGAAUGGUCAAAAGUUGAUAAAA   1429 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075049G22, full insert sequence	NA	coding protein	psRNATarget
XM_015783195.1	ncRNA:24   UGCUUACCAGUUUGCAACUAUUUU   1   ||||||*||=|||||||||||||| targets:1674   ACGAAUAGUUAAACGUUGAUAAAA   1697 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group FHA domain-containing protein DDL (LOC4339504), partial mRNA	FHA domain-containing protein DDL(LOC4339504)	coding protein	psRNATarget
AK288622.1	ncRNA:24   UGCUUACCAGUUUGCAACUAUUUU   1   ||||||*||=|||||||||||||| targets:2683   ACGAAUAGUUAAACGUUGAUAAAA   2706 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090054F13, full insert sequence	NA	coding protein	psRNATarget
AK288628.1	ncRNA:24   UGCUUACCAGUUUGCAAC-UAUUUU   1   |=*|||||||||||||||-|||||| targets:5187   AUAAAUGGUCAAACGUUGGAUAAAA   5211 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090054O04, full insert sequence	NA	coding protein	psRNATarget