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BaseInfo

ncRNA ID	novel_osa_miR586
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:2302219-2302422 [+]
Reference genome	IRGSP-1.0
Source	SRR1742988
Length	23
Mature sequence(if miRNA)	182 - CAGCGGGCUAUAGAUUUAUAGCC - 204
Stem-loop(if miRNA)	--   C                -           U    UCGAUAC   G UAUAGCUAGCUUAUAGCAUGCUAUUGUACAUACUCUUAGUGGUUCUUCCUUUUGC   CUA AAAUUUGUAGCCCGCU UUCUUCUCUUU CUUC       GUG U                                                       U   ||| |||||||||||||||| ||||||||||| ||||       ||| |                                                       U   GAU UUUAGAUAUCGGGCGA GAGAAGAGAGA GAAG       AAA U                                                       A CC   A                C           -    ------G   - AGAGAAAUUUUAUACAAAUGUCGACCGAAUAUCGAACGAUAACAUGGACGAGAUU
Stem-loop sequence	CUACAAAUUUGUAGCCCGCUUUCUUCUCUUUUCUUCUCGAUACGUGGUUAUAGCUAGCUUAUAGCAUGCUAUUGUACAUACUCUUAGUGGUUCUUCCUUUUGCUUAUUAGAGCAGGUACAAUAGCAAGCUAUAAGCCAGCUGUAAACAUAUUUUAAAGAGAUAAAGGAAGAGAGAGAAGAGCAGCGGGCUAUAGAUUUAUAGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK100013.1	ncRNA:23   CCGAUAUUUAGAUAUCGGGCGAC   1   ||||||||||||=|||||||||* targets:757   GGCUAUAAAUCUGUAGCCCGCUU   779 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013142C13, full insert sequence	NA	coding protein	psRNATarget
AK288328.1	ncRNA:23   CCGAUAUUUAGAUAUCGGGCGAC   1   ||||||||||*|||||||||||| targets:2885   GGCUAUAAAUAUAUAGCCCGCUG   2907 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090022I04, full insert sequence	NA	coding protein	psRNATarget
AK288219.1	ncRNA:23   CCGAUAUUUAGAUAUCGGGCGAC   1   |||||*||||||=|||||||||| targets:2969   GGCUACAAAUCUGUAGCCCGCUG   2991 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090011I18, full insert sequence	NA	coding protein	psRNATarget
AK288834.1	ncRNA:23   CCGAUAUUUAGAUAUCGGGCGAC   1   |||||*||||||=|||||||||| targets:67   GGCUACAAAUCUGUAGCCCGCUG   89 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090074A09, full insert sequence	NA	coding protein	psRNATarget
XM_015768045.1	ncRNA:23   CCGAUAUUUAGAUAUCGGGCGAC   1   |||||*|=||||||||||||||| targets:1227   GGCUACAGAUCUAUAGCCCGCUG   1249 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329279 (LOC4329279), mRNA	uncharacterized LOC4329279(LOC4329279)	coding protein	psRNATarget
XM_015762909.1	ncRNA:23   CCGAUAUUUAGAUAUCGGGCGAC   1   |*||||||||||=|||||||||| targets:411   GACUAUAAAUCUGUAGCCCGCUG   433 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase (LOC4352772), transcript variant X1, mRNA	beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase(LOC4352772)	coding protein	psRNATarget
CT837691.1	ncRNA:23   CCGAUAUUUAGAUAUCGGGCGAC   1   |||||*|=||||||||||||||| targets:1004   GGCUACAGAUCUAUAGCCCGCUG   1026 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114M13, full insert sequence	NA	coding protein	psRNATarget
AK111449.1	ncRNA:23   CCGAUAUUUAGAUAUCGGGCGAC   1   ||-|||||||||=|||||||||| targets:1381   GG-UAUAAAUCUGUAGCCCGCUG   1402 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-183-B08, full insert sequence	NA	coding protein	psRNATarget
XM_015790719.1	ncRNA:23   CCGAUAUUUAGAUAUCGGGCGAC   1   ||=||*||||||=|||||||||| targets:15   GGUUACAAAUCUGUAGCCCGCUG   37 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 15 (LOC4343006), mRNA	ethylene-responsive transcription factor 15(LOC4343006)	coding protein	psRNATarget
D16507.1	ncRNA:23   CCGAUAUUUAGAUAUCGGGCGAC   1   |*|||*||||||=|||||||||| targets:730   GACUACAAAUCUGUAGCCCGCUG   752 Target Full Sequence	2.5	Oryza sativa Japonica Group OSH1 mRNA for homeobox protein, complete cds	NA	coding protein	psRNATarget
XM_015773906.1	ncRNA:23   CCGAUAUUUAGAUAUCGGGCGAC   1   |*|||*||||||=|||||||||| targets:730   GACUACAAAUCUGUAGCCCGCUG   752 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group homeobox protein knotted-1-like 6 (LOC4333973), mRNA	homeobox protein knotted-1-like 6(LOC4333973)	coding protein	psRNATarget
AK067443.1	ncRNA:23   CCGAUAUUUAGAUAUCGGGCGAC   1   *||||*|||||||||||||*||| targets:2957   AGCUACAAAUCUAUAGCCCACUG   2979 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013102L13, full insert sequence	NA	coding protein	psRNATarget