Search result

BaseInfo

ncRNA ID	novel_osa_miR584
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:3780954-3781094 [-]
Reference genome	IRGSP-1.0
Source	SRR1742988;SRR1742990;SRR1742991;SRR1742992;SRR5351738
Length	24
Mature sequence(if miRNA)	118 - AGAUUCCGCCUGUAAACUAUGAGA - 141
Stem-loop(if miRNA)	--     CC  C      C              A        A   AAU    C   A UA     U  - U   AGAUU  GC UGUAAA UAUGAGACGAAUUU UUAAGCUU AUU   CCAU AUU G  AAUGU UA C G   |||||  || |||||| |||||||||||||| |||||||| |||   |||| ||| |  ||||| || |   UCUAA  CG ACAUUU AUACUCUGCUUAGA AAUUCGGA UAA   GGUA UAA C  UUACA AU G U UG     --  C      A              A        A   CGC    C   A UA     C  C A
Stem-loop sequence	AGAUUCCGCCUGUAAACUAUGAGACGAAUUUAUUAAGCUUAAUUAAUCCAUCAUUAGUAAAUGUUUACUGUAGCUACACAUUAUCAAAUCAUGGCGCAAUAAGGCUUAAAAGAUUCGUCUCAUAAUUUACACGCAAUCUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK099913.1	ncRNA:24   AGAGUAUCAAAUGUCCGCCUUAGA   1   ||||=*|||||||||||||||||| targets:806   UCUCGCAGUUUACAGGCGGAAUCU   829 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013116E13, full insert sequence	NA	coding protein	psRNATarget
AK067578.1	ncRNA:24   AGAGUAUCAAAUGUCCGCCUUAGA   1   ||||=*|||||||||||||||||| targets:1773   UCUCGCAGUUUACAGGCGGAAUCU   1796 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence	NA	coding protein	psRNATarget
AK288682.1	ncRNA:24   AGAGUAUCAAAUGUCCGCCUUAGA   1   ||||=*|||||||||||||||||| targets:446   UCUCGCAGUUUACAGGCGGAAUCU   469 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090059I11, full insert sequence	NA	coding protein	psRNATarget
AM778048.1	ncRNA:24   AGAGUAUCAAAUGUCCGCCUUAGA   1   ||||=*|||||||||||||||||| targets:76   UCUCGCAGUUUACAGGCGGAAUCU   99 Target Full Sequence	1.0	Oryza sativa Japonica Group mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar Azucena	NA	coding protein	psRNATarget
AK064922.1	ncRNA:24   AGAGUAUCAAAUGUCCGCCUUAGA   1   ||||=*|||||||||||||||||| targets:2049   UCUCGCAGUUUACAGGCGGAAUCU   2072 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013000N12, full insert sequence	NA	coding protein	psRNATarget
XM_015764825.1	ncRNA:24   AGAGUAUCAAAUGUCCGCCUUAGA   1   ||||=*|||||||||||||||||| targets:76   UCUCGCAGUUUACAGGCGGAAUCU   99 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group pre-mRNA-splicing factor CWC22 homolog (LOC4351904), mRNA	pre-mRNA-splicing factor CWC22 homolog(LOC4351904)	coding protein	psRNATarget
CT837862.1	ncRNA:24   AGAGUAUCAAAUGUCCGCCUUAGA   1   ||||=*||||||||||=||||||| targets:919   UCUCGCAGUUUACAGGUGGAAUCU   942 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA123J02, full insert sequence	NA	coding protein	psRNATarget
XM_015769825.1	ncRNA:24   AGAGUAUCAAAUGUCCGCCUUAGA   1   ||||=*||||||=||||||||||| targets:730   UCUCGCAGUUUAUAGGCGGAAUCU   753 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein At4g30940 (LOC4329965), mRNA	BTB/POZ domain-containing protein At4g30940(LOC4329965)	coding protein	psRNATarget
AK288216.1	ncRNA:24   AGAGUAUCAAAUGUCCGCCUUAGA   1   ||||=*||||||=||||||||||| targets:735   UCUCGCAGUUUAUAGGCGGAAUCU   758 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090011C22, full insert sequence	NA	coding protein	psRNATarget
AK067679.1	ncRNA:24   AGAGUAUCAAAUGUCCGCCUUAGA   1   |||||*||||||||*||||||||| targets:2201   UCUCACAGUUUACAUGCGGAAUCU   2224 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013114G19, full insert sequence	NA	coding protein	psRNATarget
CT837782.1	ncRNA:24   AGAGUAUCAAAUGUCCGCCUUAGA   1   ||||=*||||||||||*||||||| targets:1537   UCUCGCAGUUUACAGGGGGAAUCU   1560 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244J06, full insert sequence	NA	coding protein	psRNATarget
AK288617.1	ncRNA:24   AGAGUAUCAAAUGUCCGCCUUAGA   1   ||||=*|||||*|||||||||||| targets:2694   UCUCGCAGUUUUCAGGCGGAAUCU   2717 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090054B15, full insert sequence	NA	coding protein	psRNATarget
AK288343.1	ncRNA:24   AGAGUAUCAAAUGUCCGCCUUAGA   1   *||||*|||||||||||*|||||| targets:361   CCUCACAGUUUACAGGCAGAAUCU   384 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090023K08, full insert sequence	NA	coding protein	psRNATarget