Search result

BaseInfo

ncRNA ID	novel_osa_miR579
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:27461934-27462087 [-]
Reference genome	IRGSP-1.0
Source	SRR1742988;SRR1742989;SRR1742990;SRR1742996;SRR1849781;SRR5049787;SRR1738210;SRR1738211;SRR1738224
Length	24
Mature sequence(if miRNA)	1 - CCUCGAGAUACUUUUUGUUGGACC - 24
Stem-loop(if miRNA)	--           A   A           --UC   A           C         CC  AA   C   UGG  AG   UCCAGCAAAAA UAU UCGAGGUACGA    CUC UGGUAUUAAAU GUUUCCGAU  UU  AUC AGC   GC  A   ||||||||||| ||| |||||||||||    ||| ||||||||||| |||||||||  ||  ||| |||   ||   AGGUUGUUUUU AUA AGCUCCAUGUU    GAG GCUAUGGUUUA CAAAGGUUA  AA  UAG UUG   CG  A CC           C   G           UAUA   C           A         AC  CC   A   UUA  GU
Stem-loop sequence	UCCAGCAAAAAAUAUAUCGAGGUACGAUCCUCAUGGUAUUAAAUCGUUUCCGAUCCUUAAAUCCAGCUGGGCAGAAUGGCAUUGUUAGAUCCAACAAUUGGAAACAAUUUGGUAUCGCGAGAUAUUUGUACCUCGAGAUACUUUUUGUUGGACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015779655.1	ncRNA:24   CCAGGUUGUUUUUCAUAGAGCUCC   1   |||||||=|||||||||||||||| targets:1463   GGUCCAAUAAAAAGUAUCUCGAGG   1486 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280684 (LOC107280684), transcript variant X1, mRNA	uncharacterized LOC107280684(LOC107280684)	coding protein	psRNATarget
LQ236249.1	ncRNA:24   CCAGGUUGUUUUUCAUAGAGCUCC   1   ||||=||||=|||||||||||||| targets:10   GGUCUAACAGAAAGUAUCUCGAGG   33 Target Full Sequence	1.0	Sequence 2244 from Patent EP2985353	NA	coding protein	psRNATarget
HI404119.1	ncRNA:24   CCAGGUUGUUUUUCAUAGAGCUCC   1   ||||=||||=|||||||||||||| targets:10   GGUCUAACAGAAAGUAUCUCGAGG   33 Target Full Sequence	1.0	Sequence 2244 from Patent EP2074227	NA	coding protein	psRNATarget
JB164580.1	ncRNA:24   CCAGGUUGUUUUUCAUAGAGCUCC   1   ||||=||||=|||||||||||||| targets:10   GGUCUAACAGAAAGUAUCUCGAGG   33 Target Full Sequence	1.0	Sequence 2244 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235663.1	ncRNA:24   CCAGGUUGUUUUUCAUAGAGCUCC   1   ||||||||||||||||*||||||| targets:9   GGUCCAACAAAAAGUACCUCGAGG   32 Target Full Sequence	1.5	Sequence 1658 from Patent EP2985353	NA	coding protein	psRNATarget
JB163994.1	ncRNA:24   CCAGGUUGUUUUUCAUAGAGCUCC   1   ||||||||||||||||*||||||| targets:9   GGUCCAACAAAAAGUACCUCGAGG   32 Target Full Sequence	1.5	Sequence 1658 from Patent EP2559767	NA	coding protein	psRNATarget
HI403533.1	ncRNA:24   CCAGGUUGUUUUUCAUAGAGCUCC   1   ||||||||||||||||*||||||| targets:9   GGUCCAACAAAAAGUACCUCGAGG   32 Target Full Sequence	1.5	Sequence 1658 from Patent EP2074227	NA	coding protein	psRNATarget
HI404538.1	ncRNA:24   CCAGGUUGUUUUUCAUAGAGCUCC   1   |||||||||||||*|||||||||| targets:10   GGUCCAACAAAAAAUAUCUCGAGG   33 Target Full Sequence	1.5	Sequence 2663 from Patent EP2074227	NA	coding protein	psRNATarget
JB164999.1	ncRNA:24   CCAGGUUGUUUUUCAUAGAGCUCC   1   |||||||||||||*|||||||||| targets:10   GGUCCAACAAAAAAUAUCUCGAGG   33 Target Full Sequence	1.5	Sequence 2663 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236668.1	ncRNA:24   CCAGGUUGUUUUUCAUAGAGCUCC   1   |||||||||||||*|||||||||| targets:10   GGUCCAACAAAAAAUAUCUCGAGG   33 Target Full Sequence	1.5	Sequence 2663 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015786123.1	ncRNA:24   CCAGGUUGUUUUUCAUAGAGCUCC   1   ||||||||||||||||*||||||| targets:619   GGUCCAACAAAAAGUAACUCGAGG   642 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA	uncharacterized LOC4340617(LOC4340617)	coding protein	psRNATarget
AK287529.1	ncRNA:24   CCAGGUUGUUUUUCAUAGAGCUCC   1   ||||||||||||||||*||||||| targets:130   GGUCCAACAAAAAGUAACUCGAGG   153 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
AK240791.1	ncRNA:24   CCAGGUUGUUUUUCAUAGAGCUCC   1   ||||||||||||||||*||||||| targets:130   GGUCCAACAAAAAGUAACUCGAGG   153 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
AK063705.1	ncRNA:24   CCAGGUUGUUUUUCAUAGAGCUCC   1   ||||||=|||||||||||||||*| targets:483   GGUCCAGCAAAAAGUAUCUCGAAG   506 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-119-H03, full insert sequence	NA	coding protein	psRNATarget
EF626940.1	ncRNA:24   CCAGGUUGUUUUUCAUAGAGCUCC   1   ||||||=|||||||||||||||*| targets:989   GGUCCAGCAAAAAGUAUCUCGAAG   1012 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds	NA	coding protein	psRNATarget
XM_015755547.1	ncRNA:24   CCAGGUUGUUUUUCAUAGAGCUCC   1   ||||||=|||||||||||||||*| targets:1464   GGUCCAGCAAAAAGUAUCUCGAAG   1487 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group zinc finger protein WIP2 (LOC4347420), mRNA	zinc finger protein WIP2(LOC4347420)	coding protein	psRNATarget
XM_015790062.1	ncRNA:24   CCAGGUUGUUUUUCAUAGAGCUCC   1   |||=||||||||||||||*||||| targets:2277   GGUUCAACAAAAAGUAUCCCGAGG   2300 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group L-type lectin-domain containing receptor kinase IV.1 (LOC9268564), mRNA	L-type lectin-domain containing receptor kinase IV.1(LOC9268564)	coding protein	psRNATarget
AK100297.1	ncRNA:24   CCAGGUUGUUUUUCAUAGAGCUCC   1   |||||||||||||*|||||||||* targets:1291   GGUCCAACAAAAAUUAUCUCGAGA   1314 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023077B14, full insert sequence	NA	coding protein	psRNATarget
XM_015793616.1	ncRNA:24   CCAGGUUGUUUUUCAUAGAGCUCC   1   |||||||||||||*|||||||||* targets:1466   GGUCCAACAAAAAUUAUCUCGAGA   1489 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable auxin efflux carrier component 4 (LOC4346116), mRNA	probable auxin efflux carrier component 4(LOC4346116)	coding protein	psRNATarget
AK108234.1	ncRNA:24   CCAGGUUGUUUUUCAUAGAGCUCC   1   |*||=|=|||||||||||||||*| targets:419   GAUCUAGCAAAAAGUAUCUCGAUG   442 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-140-G06, full insert sequence	NA	coding protein	psRNATarget