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BaseInfo

ncRNA ID	novel_osa_miR572
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:1077924-1078137 [+]
Reference genome	IRGSP-1.0
Source	SRR1742988;SRR2857729
Length	23
Mature sequence(if miRNA)	1 - UUUAUAUUACAAGUCGUUUGAUU - 23
Stem-loop(if miRNA)	--         C             A           U       CUCCAAA   A                  GAUA     AAAUAG      UU     G     UAAU   UUUAUAUUA AAGUCGUUUGAUU UUUUUUCCUAG CAAACUU       UUU ACCAAGUUUAUAAAAAAA    UAGUU      AUAUAU  AAUAU AGAUU    G   ||||||||| ||||||||||||| ||||||||||| |||||||       ||| ||||||||||||||||||    |||||      ||||||  ||||| |||||   AAGUAUAAU UUCAGCAAACUAA AAAAAAGGAUC GUUUGAA       AAA UGGUUCAAAUAUUUUUUU    AUCGG      UAUAUA  UUAUA UUUAA    A UA         A             -           U       AUAAUUC   C                  ---A     ------      UU     A     UCAA
Stem-loop sequence	UUUAUAUUACAAGUCGUUUGAUUAUUUUUUCCUAGUCAAACUUCUCCAAAUUUAACCAAGUUUAUAAAAAAAGAUAUAGUUAAAUAGAUAUAUUUAAUAUGAGAUUUAAUGAAACUAAUUUAAUAUUUUAUAUAUGGCUAAUUUUUUUAUAAACUUGGUCAAACUUAAUAAAGUUUGUCUAGGAAAAAAAAUCAAACGACUUAUAAUAUGAAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT835358.1	ncRNA:23   UUAGUUUGCUGAACAUUAUAUUU   1   |||||||=||||||||||||||| targets:540   AAUCAAAUGACUUGUAAUAUAAA   562 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI019K19, full insert sequence	NA	coding protein	psRNATarget
AK288707.1	ncRNA:23   UUAGUUUGCUGAACAUUAUAUUU   1   |||||||=|||||*||||||||| targets:1068   AAUCAAAUGACUUAUAAUAUAAA   1090 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090061M09, full insert sequence	NA	coding protein	psRNATarget
AK064579.1	ncRNA:23   UUAGUUUGCUGAACAUUAUAUUU   1   |=|||||||||||*||||||||| targets:859   AGUCAAACGACUUAUAAUAUAAA   881 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-112-E11, full insert sequence	NA	coding protein	psRNATarget
AK064956.1	ncRNA:23   UUAGUUUGCUGAACAUUAUAUUU   1   |||-|||||||||*||||||||| targets:1525   AAU-AAACGACUUAUAAUAUAAA   1546 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013001A06, full insert sequence	NA	coding protein	psRNATarget
AK289190.1	ncRNA:23   UUAGUUUGCUGAACAUUAUAUUU   1   |=||||||*||||*||||||||| targets:1252   AGUCAAACAACUUAUAAUAUAAA   1274 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J100038P15, full insert sequence	NA	coding protein	psRNATarget
AK109666.1	ncRNA:23   UUAGUUUGCUGAACAUUAUAUUU   1   |=||||||*||||*||||||||| targets:1295   AGUCAAACAACUUAUAAUAUAAA   1317 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-145-A04, full insert sequence	NA	coding protein	psRNATarget