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BaseInfo

ncRNA ID	novel_osa_miR558
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:27666771-27666937 [-]
Reference genome	IRGSP-1.0
Source	SRR1738244;SRR1742996;SRR1743002;SRR2040383;SRR2040385;SRR2040387;SRR2040391;SRR2040400;SRR2040403;SRR2040405;SRR2040406;SRR5351740;SRR1738223
Length	24
Mature sequence(if miRNA)	144 - GACUUUUUGAUAAACGUUUGACCU - 167
Stem-loop(if miRNA)	--           A           U           C    AA               -UU     UAU     CUUG    AU   GACUUUUUGAU AACGUUUGACC UUCGUCUUAUU AAAA  UUUAUGUAAAUAUAA   UAUUU   UGUAA    AUUU  C   ||||||||||| ||||||||||| ||||||||||| ||||  |||||||||||||||   |||||   |||||    ||||   CUGAAAAAUUG UUGCAAACUGG GAGCAGAAUAA UUUU  AAAUACGUUUAUAUU   AUGAA   ACAUU    UAAA  A AA           G           U           A    AA               UUU     --U     CUUG    CA
Stem-loop sequence	GACUUUUUGAUAAACGUUUGACCUUUCGUCUUAUUCAAAAAAUUUAUGUAAAUAUAAUUUAUUUUAUUGUAACUUGAUUUAUCAACAAAUGUUCUUACAUAAGUAUUUUUAUAUUUGCAUAAAAAUUUUAAAUAAGACGAGUGGUCAAACGUUGGUUAAAAAGUCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT835080.1	ncRNA:24   UCCAGUUUGCAAAUAGUUUUUCAG   1   |||||||||||||=|||||||||| targets:1133   AGGUCAAACGUUUGUCAAAAAGUC   1156 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN071I07, full insert sequence	NA	coding protein	psRNATarget
AK068361.1	ncRNA:24   UCCAGUUUGCAAAUAGUUUUUCAG   1   **|||||||||||||||||||||| targets:743   UAGUCAAACGUUUAUCAAAAAGUC   766 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013146F13, full insert sequence	NA	coding protein	psRNATarget
AK288703.1	ncRNA:24   UCCAGUUUGCAAAUAGUUUUUCAG   1   ||*|||||=||||=|||||||||| targets:3206   AGAUCAAAUGUUUGUCAAAAAGUC   3229 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090061G13, full insert sequence	NA	coding protein	psRNATarget
AK241447.1	ncRNA:24   UC-CAGUUUGCAAAUAGUUUUUCAG   1   ||-|*|||||*|||||||||||||= targets:1954   AGAGCCAAACAUUUAUCAAAAAGUU   1978 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J065163F05, full insert sequence	NA	coding protein	psRNATarget