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BaseInfo

ncRNA ID	novel_osa_miR556
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:25081215-25081385 [+]
Reference genome	IRGSP-1.0
Source	SRR1738244;SRR2040388;SRR2040390;SRR2040394;SRR2040396;SRR2040403;SRR2040404;SRR2040409
Length	21
Mature sequence(if miRNA)	151 - AUACUUUUUGUUGGACCGAAG - 171
Stem-loop(if miRNA)	--               -     C   A   A                 --CG AUAUCGUUUCUGAUCGUUGGAUCUAGCUGGGUA   UCGGUCUAGCAAAAA UAUCU GAG UAA GGUACCUCAUGGUACUA    U                                 G   ||||||||||||||| ||||| ||| ||| |||||||||||||||||    |   AGCCAGGUUGUUUUU AUAGA CUC AUU CUAUGGAGUGUCAUGGU    C                                 A GA               C     C   C   G                 UUAA AAAGGCUAGUUUAGCAAAGAUUAGCAUACGGAA
Stem-loop sequence	UCGGUCUAGCAAAAAUAUCUCGAGAUAAAGGUACCUCAUGGUACUACGUAUAUCGUUUCUGAUCGUUGGAUCUAGCUGGGUAGAAAGGCAUACGAUUAGAAACGAUUUGAUCGGAAACAAUUUGGUACUGUGAGGUAUCGUUACCUCCAGAUACUUUUUGUUGGACCGAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK063705.1	ncRNA:21   GAAGCCAGGUUGUUUUUCAUA   1   ||||||||||=|||||||||| targets:479   CUUCGGUCCAGCAAAAAGUAU   499 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-119-H03, full insert sequence	NA	coding protein	psRNATarget
EF626940.1	ncRNA:21   GAAGCCAGGUUGUUUUUCAUA   1   ||||||||||=|||||||||| targets:985   CUUCGGUCCAGCAAAAAGUAU   1005 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds	NA	coding protein	psRNATarget
XM_015755547.1	ncRNA:21   GAAGCCAGGUUGUUUUUCAUA   1   ||||||||||=|||||||||| targets:1460   CUUCGGUCCAGCAAAAAGUAU   1480 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group zinc finger protein WIP2 (LOC4347420), mRNA	zinc finger protein WIP2(LOC4347420)	coding protein	psRNATarget
XM_015790062.1	ncRNA:21   GAAGCCAGGUUGUUUUUCAUA   1   |||||||=||||||||||||| targets:2273   CUUCGGUUCAACAAAAAGUAU   2293 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group L-type lectin-domain containing receptor kinase IV.1 (LOC9268564), mRNA	L-type lectin-domain containing receptor kinase IV.1(LOC9268564)	coding protein	psRNATarget
AK100297.1	ncRNA:21   GAAGCCAGGUUGUUUUUCAUA   1   |||||||||||||||||*||| targets:1287   CUUCGGUCCAACAAAAAUUAU   1307 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023077B14, full insert sequence	NA	coding protein	psRNATarget
XM_015793616.1	ncRNA:21   GAAGCCAGGUUGUUUUUCAUA   1   |||||||||||||||||*||| targets:1462   CUUCGGUCCAACAAAAAUUAU   1482 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable auxin efflux carrier component 4 (LOC4346116), mRNA	probable auxin efflux carrier component 4(LOC4346116)	coding protein	psRNATarget
XM_015779655.1	ncRNA:21   GAAGCCAGGUUGUUUUUCAUA   1   ||*||||||||=||||||||| targets:1459   CUCCGGUCCAAUAAAAAGUAU   1479 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280684 (LOC107280684), transcript variant X1, mRNA	uncharacterized LOC107280684(LOC107280684)	coding protein	psRNATarget
AK103106.1	ncRNA:21   GAAGCCAGGUUGUUUUUCAUA   1   *||||||||||=||||||||* targets:1432   AUUCGGUCCAAUAAAAAGUAC   1452 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033118O22, full insert sequence	NA	coding protein	psRNATarget
XM_015765802.1	ncRNA:21   GAAGCCAGGUUGUUUUUCAUA   1   *||||||||||=||||||||* targets:1431   AUUCGGUCCAAUAAAAAGUAC   1451 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group polygalacturonase (LOC4326679), mRNA	polygalacturonase(LOC4326679)	coding protein	psRNATarget
XM_015786123.1	ncRNA:21   GAAGCCAGGUUGUUUUUCAUA   1   ||*|||||||||||||||||* targets:615   CUCCGGUCCAACAAAAAGUAA   635 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA	uncharacterized LOC4340617(LOC4340617)	coding protein	psRNATarget
AK287529.1	ncRNA:21   GAAGCCAGGUUGUUUUUCAUA   1   ||*|||||||||||||||||* targets:126   CUCCGGUCCAACAAAAAGUAA   146 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
AK240791.1	ncRNA:21   GAAGCCAGGUUGUUUUUCAUA   1   ||*|||||||||||||||||* targets:126   CUCCGGUCCAACAAAAAGUAA   146 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence	NA	coding protein	psRNATarget
LQ235663.1	ncRNA:21   GAAG-CCAGGUUGUUUUUCAUA   1   *|||-||||||||||||||||* targets:4   GUUCUGGUCCAACAAAAAGUAC   25 Target Full Sequence	3.0	Sequence 1658 from Patent EP2985353	NA	coding protein	psRNATarget
JB163994.1	ncRNA:21   GAAG-CCAGGUUGUUUUUCAUA   1   *|||-||||||||||||||||* targets:4   GUUCUGGUCCAACAAAAAGUAC   25 Target Full Sequence	3.0	Sequence 1658 from Patent EP2559767	NA	coding protein	psRNATarget
HI403533.1	ncRNA:21   GAAG-CCAGGUUGUUUUUCAUA   1   *|||-||||||||||||||||* targets:4   GUUCUGGUCCAACAAAAAGUAC   25 Target Full Sequence	3.0	Sequence 1658 from Patent EP2074227	NA	coding protein	psRNATarget
HI404538.1	ncRNA:21   GAAGCCAGGUUGUUUUUCAUA   1   ||*||||||||||||||*||| targets:6   CUCCGGUCCAACAAAAAAUAU   26 Target Full Sequence	2.5	Sequence 2663 from Patent EP2074227	NA	coding protein	psRNATarget
JB164999.1	ncRNA:21   GAAGCCAGGUUGUUUUUCAUA   1   ||*||||||||||||||*||| targets:6   CUCCGGUCCAACAAAAAAUAU   26 Target Full Sequence	2.5	Sequence 2663 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236668.1	ncRNA:21   GAAGCCAGGUUGUUUUUCAUA   1   ||*||||||||||||||*||| targets:6   CUCCGGUCCAACAAAAAAUAU   26 Target Full Sequence	2.5	Sequence 2663 from Patent EP2985353	NA	coding protein	psRNATarget