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BaseInfo

ncRNA ID	novel_osa_miR554
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:8584772-8584827 [-]
Reference genome	IRGSP-1.0
Source	SRR1738244;SRR2040407
Length	24
Mature sequence(if miRNA)	33 - AUUCUAAUACAACAAAUCUGGACA - 56
Stem-loop(if miRNA)	--             A        C  A   AUUCUAAUACAAC AAUCUGGA AU U   ||||||||||||| |||||||| ||   UAAGAUUAUGUUG UUAGAUCU UA G UG             C        A  U
Stem-loop sequence	AUUCUAAUACAACAAAUCUGGACAUAUGUAUAUCUAGAUUCGUUGUAUUAGAAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403880.1	ncRNA:24   ACAGGUCUAAACAACAUAAUCUUA   1   ||||||||||*||||||||||||| targets:55   UGUCCAGAUUCGUUGUAUUAGAAU   78 Target Full Sequence	1.0	Sequence 2005 from Patent EP2074227	NA	coding protein	psRNATarget
JB164341.1	ncRNA:24   ACAGGUCUAAACAACAUAAUCUUA   1   ||||||||||*||||||||||||| targets:55   UGUCCAGAUUCGUUGUAUUAGAAU   78 Target Full Sequence	1.0	Sequence 2005 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236010.1	ncRNA:24   ACAGGUCUAAACAACAUAAUCUUA   1   ||||||||||*||||||||||||| targets:55   UGUCCAGAUUCGUUGUAUUAGAAU   78 Target Full Sequence	1.0	Sequence 2005 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015780738.1	ncRNA:24   ACAGGUCUAAACAACAUAAUCUUA   1   |||=|||||||||||||*|||||| targets:921   UGUUCAGAUUUGUUGUACUAGAAU   944 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group UPF0548 protein At2g17695 (LOC4334967), transcript variant X2, mRNA	UPF0548 protein At2g17695(LOC4334967)	coding protein	psRNATarget
XM_015780740.1	ncRNA:24   ACAGGUCUAAACAACAUAAUCUUA   1   |||=|||||||||||||*|||||| targets:921   UGUUCAGAUUUGUUGUACUAGAAU   944 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group UPF0548 protein At2g17695 (LOC4334967), transcript variant X4, mRNA	UPF0548 protein At2g17695(LOC4334967)	coding protein	psRNATarget
XM_015780739.1	ncRNA:24   ACAGGUCUAAACAACAUAAUCUUA   1   |||=|||||||||||||*|||||| targets:921   UGUUCAGAUUUGUUGUACUAGAAU   944 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group UPF0548 protein At2g17695 (LOC4334967), transcript variant X3, mRNA	UPF0548 protein At2g17695(LOC4334967)	coding protein	psRNATarget
XM_015760341.1	ncRNA:24   ACAGGUCUAAACAACAUAAUCUUA   1   |||==||||||||*|||||||||| targets:421   UGUUUAGAUUUGUAGUAUUAGAAU   444 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable transcriptional regulator RABBIT EARS (LOC9271775), mRNA	probable transcriptional regulator RABBIT EARS(LOC9271775)	coding protein	psRNATarget
XM_015758208.1	ncRNA:24   ACAGGUCUAAACAACAUAAUCUUA   1   ||||=|||||*|||*||||||||| targets:2486   UGUCUAGAUUCGUUAUAUUAGAAU   2509 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272131 (LOC9272131), transcript variant X1, mRNA	uncharacterized LOC9272131(Os01g0200175)	coding protein	psRNATarget
XM_015758212.1	ncRNA:24   ACAGGUCUAAACAACAUAAUCUUA   1   ||||=|||||*|||*||||||||| targets:2188   UGUCUAGAUUCGUUAUAUUAGAAU   2211 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272131 (LOC9272131), transcript variant X2, mRNA	uncharacterized LOC9272131(Os01g0200175)	coding protein	psRNATarget
XM_015758220.1	ncRNA:24   ACAGGUCUAAACAACAUAAUCUUA   1   ||||=|||||*|||*||||||||| targets:2113   UGUCUAGAUUCGUUAUAUUAGAAU   2136 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272131 (LOC9272131), transcript variant X3, mRNA	uncharacterized LOC9272131(Os01g0200175)	coding protein	psRNATarget
XM_015758227.1	ncRNA:24   ACAGGUCUAAACAACAUAAUCUUA   1   ||||=|||||*|||*||||||||| targets:1736   UGUCUAGAUUCGUUAUAUUAGAAU   1759 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272131 (LOC9272131), transcript variant X4, mRNA	uncharacterized LOC9272131(Os01g0200175)	coding protein	psRNATarget
CT836320.1	ncRNA:24   ACAGGUCUAAACAACAUAAUCUUA   1   |*|*|||||||||||||||||||* targets:841   UAUACAGAUUUGUUGUAUUAGAAA   864 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN050I03, full insert sequence	NA	coding protein	psRNATarget
AK288458.1	ncRNA:24   ACAGGUCUAAACAACAUAAUCUUA   1   |*||=|*||||||||||||||=|| targets:1745   UAUCUAAAUUUGUUGUAUUAGGAU   1768 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090035E13, full insert sequence	NA	coding protein	psRNATarget
AK288418.1	ncRNA:24   ACAGGUCUAAACAACAUAAUCUUA   1   |*||||||||*||*|||||||||| targets:776   UAUCCAGAUUCGUAGUAUUAGAAU   799 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090031L18, full insert sequence	NA	coding protein	psRNATarget
LQ235678.1	ncRNA:24   ACAGGUCUAAACAACAUAAUCUUA   1   |*||||||||*||*|||||||||| targets:41   UAUCCAGAUUCGUAGUAUUAGAAU   64 Target Full Sequence	2.5	Sequence 1673 from Patent EP2985353	NA	coding protein	psRNATarget
JB164009.1	ncRNA:24   ACAGGUCUAAACAACAUAAUCUUA   1   |*||||||||*||*|||||||||| targets:41   UAUCCAGAUUCGUAGUAUUAGAAU   64 Target Full Sequence	2.5	Sequence 1673 from Patent EP2559767	NA	coding protein	psRNATarget
HI403548.1	ncRNA:24   ACAGGUCUAAACAACAUAAUCUUA   1   |*||||||||*||*|||||||||| targets:41   UAUCCAGAUUCGUAGUAUUAGAAU   64 Target Full Sequence	2.5	Sequence 1673 from Patent EP2074227	NA	coding protein	psRNATarget
AK103634.1	ncRNA:24   ACAGGUCUAAACAACAUAAUCUUA   1   |*||=|||||**|||||||||||| targets:2071   UAUCUAGAUUCAUUGUAUUAGAAU   2094 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033134B11, full insert sequence	NA	coding protein	psRNATarget