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BaseInfo

ncRNA ID	novel_osa_miR553
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:5002988-5003057 [+]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1556014
Length	21
Mature sequence(if miRNA)	50 - AGCGGUGGAGCUCAGGGUGGA - 70
Stem-loop(if miRNA)	--        CUU    G       -    A    CU   CGCUCUGG   GCUC ACUGCUU AGUG UCUC  C   ||||||||   |||| ||||||| |||| ||||  G   GUGGGACU   CGAG UGGCGAG UCAU AGAG  G AG        ---    G       G    -    AC
Stem-loop sequence	CGCUCUGGCUUGCUCGACUGCUUAGUGAUCUCCUCGGCAGAGAUACUGGAGCGGUGGAGCUCAGGGUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288495.1	ncRNA:21   AGGUGGGACUCGAGGUGGCGA   1   ||||||||||||||||||||| targets:550   UCCACCCUGAGCUCCACCGCU   570 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090040M20, full insert sequence	NA	coding protein	psRNATarget
XM_015792049.1	ncRNA:21   AGGUGGGACUCGAGGUGGCGA   1   ||||||||||||||||||||| targets:2301   UCCACCCUGAGCUCCACCGCU   2321 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281789 (LOC107281789), transcript variant X2, mRNA	uncharacterized LOC107281789(LOC107281789)	coding protein	psRNATarget
XM_015792048.1	ncRNA:21   AGGUGGGACUCGAGGUGGCGA   1   ||||||||||||||||||||| targets:2301   UCCACCCUGAGCUCCACCGCU   2321 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281789 (LOC107281789), transcript variant X1, mRNA	uncharacterized LOC107281789(LOC107281789)	coding protein	psRNATarget
XM_015778938.1	ncRNA:21   AGGUGGGACUCGAGGUGGCGA   1   ||||||||||||||||||||| targets:3718   UCCACCCUGAGCUCCACCGCU   3738 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277286 (LOC107277286), mRNA	uncharacterized LOC107277286(LOC107277286)	coding protein	psRNATarget
XM_015781185.1	ncRNA:21   AGGUGGGACUCGAGGUGGCGA   1   ||||||||||||||||||||| targets:2351   UCCACCCUGAGCUCCACCGCU   2371 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group DDT domain-containing protein DDB_G0282237 (LOC4335924), transcript variant X2, mRNA	DDT domain-containing protein DDB_G0282237(LOC4335924)	coding protein	psRNATarget
AK120234.1	ncRNA:21   AGGUGGGACUCGAGGUGGCGA   1   |||||||||||||||||=||| targets:2910   UCCACCCUGAGCUCCACUGCU   2930 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013043L17, full insert sequence	NA	coding protein	psRNATarget
XM_015770773.1	ncRNA:21   AGGUGGGACUCGAGGUGGCGA   1   ||||||||||||||=|||||| targets:1980   UCCACCCUGAGCUCUACCGCU   2000 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280153 (LOC107280153), mRNA	uncharacterized LOC107280153(LOC107280153)	coding protein	psRNATarget
AK101042.1	ncRNA:21   AGGUGGGACUCGAGGUGGCGA   1   |||||||||||||||||=||| targets:1197   UCCACCCUGAGCUCCACUGCU   1217 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033003J10, full insert sequence	NA	coding protein	psRNATarget
XM_015788849.1	ncRNA:21   AGGUGGGACUCGAGGUGGCGA   1   *||||||||||||=||||||* targets:367   GCCACCCUGAGCUUCACCGCC   387 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 (LOC107281461), mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5(LOC107281461)	coding protein	psRNATarget
AK110923.1	ncRNA:21   AGGUGGGACUCGAGGUGGCGA   1   ||||||**||||||||||||* targets:197   UCCACCGGGAGCUCCACCGCC   217 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-173-D04, full insert sequence	NA	coding protein	psRNATarget