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BaseInfo

ncRNA ID	novel_osa_miR552
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:1040354-1040406 [+]
Reference genome	IRGSP-1.0
Source	SRR1298758;SRR1300837
Length	24
Mature sequence(if miRNA)	30 - GGGACUUAUGUUUUUGUGAGAGGG - 53
Stem-loop(if miRNA)	-  -                        CC CUCACAAAAGUAUAAGUCCCUAU  || ||||||||||||||||||||||G  GG GAGUGUUUUUGUAUUCAGGGAUG G  A
Stem-loop sequence	CCCUCACAAAAGUAUAAGUCCCUAUGGUAGGGACUUAUGUUUUUGUGAGAGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015787235.1	ncRNA:24   GGGAGAGUGUUUUUGUAUUCAGGG   1   ||||||||||||||||||||||=| targets:579   CCCUCUCACAAAAACAUAAGUCUC   602 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278615 (LOC107278615), mRNA	uncharacterized LOC107278615(LOC107278615)	coding protein	psRNATarget
XM_015771989.1	ncRNA:24   GGGAGAGUGUUUUUGUAUUCAGGG   1   ||||||||||||||=||||||||| targets:2073   CCCUCUCACAAAAAUAUAAGUCCC   2096 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group ceramide kinase (LOC4330198), transcript variant X4, mRNA	ceramide kinase(LOC4330198)	coding protein	psRNATarget
XM_015771988.1	ncRNA:24   GGGAGAGUGUUUUUGUAUUCAGGG   1   ||||||||||||||=||||||||| targets:2170   CCCUCUCACAAAAAUAUAAGUCCC   2193 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group ceramide kinase (LOC4330198), transcript variant X3, mRNA	ceramide kinase(LOC4330198)	coding protein	psRNATarget
FJ765452.1	ncRNA:24   GGGAGAGUGUUUUUGUAUUCAGGG   1   ||||||||||||||=||||||||| targets:2179   CCCUCUCACAAAAAUAUAAGUCCC   2202 Target Full Sequence	1.5	Oryza sativa Japonica Group ceramide kinase mRNA, complete cds	NA	coding protein	psRNATarget
XM_015771987.1	ncRNA:24   GGGAGAGUGUUUUUGUAUUCAGGG   1   ||||||||||||||=||||||||| targets:2201   CCCUCUCACAAAAAUAUAAGUCCC   2224 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group ceramide kinase (LOC4330198), transcript variant X2, mRNA	ceramide kinase(LOC4330198)	coding protein	psRNATarget
XM_015771986.1	ncRNA:24   GGGAGAGUGUUUUUGUAUUCAGGG   1   ||||||||||||||=||||||||| targets:2263   CCCUCUCACAAAAAUAUAAGUCCC   2286 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group ceramide kinase (LOC4330198), transcript variant X1, mRNA	ceramide kinase(LOC4330198)	coding protein	psRNATarget
XM_015763851.1	ncRNA:24   GGGAGAGUGUUUUUGUAUUCAGGG   1   *||||||||||||||||||*|||| targets:2219   ACCUCUCACAAAAACAUAAAUCCC   2242 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107276352 (LOC107276352), mRNA	uncharacterized LOC107276352(LOC107276352)	coding protein	psRNATarget
AK108885.1	ncRNA:24   GGGAGAGUGUUUUUGUAUUCAGGG   1   |||||||*=||||||||||||||= targets:566   CCCUCUCUUAAAAACAUAAGUCCU   589 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-152-D11, full insert sequence	NA	coding protein	psRNATarget