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BaseInfo

ncRNA ID	novel_osa_miR550
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:16542707-16542803 [-]
Reference genome	IRGSP-1.0
Source	SRR1738244
Length	24
Mature sequence(if miRNA)	1 - UUUCAUGUCUCGUAUUGGAUUGUU - 24
Stem-loop(if miRNA)	--   -  UU    UA        C  -------                      CAA CC  AGUA  GGACAUGA AC       UAUUAUAAAUUUGGAUAAGC   ||| ||  ||||  |||||||| ||       |||||||||||||||||||C   GUU GG  UUAU  UCUGUACU UG       AUGAUAUUUAGAUUUAUUCU UU   A  --    GC        U  UAACAUU
Stem-loop sequence	CAACCUUAGUAUAGGACAUGACACUAUUAUAAAUUUGGAUAAGCCUCUUAUUUAGAUUUAUAGUAUUACAAUGUUUCAUGUCUCGUAUUGGAUUGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015757027.1	ncRNA:24   UUGUUAGGUUAUGCUCUGUACUUU   1   ||*|||*||=|||||||||||||* targets:1516   AAGAAUACAGUACGAGACAUGAAU   1539 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group DNA mismatch repair protein MLH3 (LOC4347791), transcript variant X2, mRNA	DNA mismatch repair protein MLH3(LOC4347791)	coding protein	psRNATarget
AK287685.1	ncRNA:24   UUGUUAGGUUAUGCUCUGUACUUU   1   ||*|||*||=|||||||||||||* targets:1599   AAGAAUACAGUACGAGACAUGAAU   1622 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J065124P13, full insert sequence	NA	coding protein	psRNATarget
XM_015757026.1	ncRNA:24   UUGUUAGGUUAUGCUCUGUACUUU   1   ||*|||*||=|||||||||||||* targets:1632   AAGAAUACAGUACGAGACAUGAAU   1655 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group DNA mismatch repair protein MLH3 (LOC4347791), transcript variant X1, mRNA	DNA mismatch repair protein MLH3(LOC4347791)	coding protein	psRNATarget