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BaseInfo

ncRNA ID	novel_osa_miR547
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:11035225-11035344 [+]
Reference genome	IRGSP-1.0
Source	SRR1738244;SRR1742988;SRR1742989;SRR1742991;SRR1742992;SRR1743006;SRR2040406;SRR2857734;SRR3123650;SRR4407960;SRR5049782;SRR5351737;SRR1612404;SRR1738217;SRR1738221;SRR1738224;SRR1738237;SRR1738239
Length	24
Mature sequence(if miRNA)	1 - AGAACCGGGACUAAAAAUGAUCUU - 24
Stem-loop(if miRNA)	--A              A  G        UC        A       -   CU   UU  G    GAACCGGGACUAAA AU AUCUUUAG  CCGGUUGA AACCCUA UCG  AUU  AU A    |||||||||||||| || ||||||||  |||||||| ||||||| |||  |||  ||    CUUGGCCCUGAUUU UA UAGAAAUU  GGUCAACU UUGGGGU GGC  UGA  UG U UUA              C  G        UA        C       U   CC   -U  C
Stem-loop sequence	AGAACCGGGACUAAAAAUGAUCUUUAGUCCCGGUUGAAAACCCUAUCGCUAUUUUAUGAUCGUUAGUCCCGGUUGGGGUUCUCAACUGGAUUUAAAGAUGAUCUUUAGUCCCGGUUCAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015755884.1	ncRNA:24   UUCUAGUAAAAAUCAGGGCCAAGA   1   |||||||||||||||||||||||* targets:1319   AAGAUCAUUUUUAGUCCCGGUUCA   1342 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group S-norcoclaurine synthase 1 (LOC4346830), mRNA	S-norcoclaurine synthase 1(LOC4346830)	coding protein	psRNATarget
AK288438.1	ncRNA:24   UUCUAGUAAAAAUCAGGGCCAAGA   1   |||||||||||||||||||||||* targets:1348   AAGAUCAUUUUUAGUCCCGGUUCA   1371 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288153.1	ncRNA:24   UUCUAGUAAAAAUCAGGGCCAAGA   1   *|||||||*||||||||||||||| targets:35   UAGAUCAUCUUUAGUCCCGGUUCU   58 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J080319C04, full insert sequence	NA	coding protein	psRNATarget
XM_015774888.1	ncRNA:24   UUCUAGUAAAAAUCAGGGCCAAGA   1   *|||||||*||||||||||||||| targets:1436   UAGAUCAUCUUUAGUCCCGGUUCU   1459 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X3, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
XM_015774887.1	ncRNA:24   UUCUAGUAAAAAUCAGGGCCAAGA   1   *|||||||*||||||||||||||| targets:1442   UAGAUCAUCUUUAGUCCCGGUUCU   1465 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X2, mRNA	metacaspase-1(LOC4333012)	coding protein	psRNATarget
AK288463.1	ncRNA:24   UUCUAGUAAAAAUCAGGGCCAAGA   1   ||||||||||*||||||||||||* targets:499   AAGAUCAUUUGUAGUCCCGGUUCA   522 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
XM_015759969.1	ncRNA:24   UUCUAGUAAAAAUCAGGGCCAAGA   1   |=||||||*||||||||||||||* targets:1866   AGGAUCAUCUUUAGUCCCGGUUCA   1889 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g58930 (LOC9269963), transcript variant X3, mRNA	F-box/LRR-repeat protein At3g58930(LOC9269963)	coding protein	psRNATarget
XM_015759968.1	ncRNA:24   UUCUAGUAAAAAUCAGGGCCAAGA   1   |=||||||*||||||||||||||* targets:3364   AGGAUCAUCUUUAGUCCCGGUUCA   3387 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g58930 (LOC9269963), transcript variant X1, mRNA	F-box/LRR-repeat protein At3g58930(LOC9269963)	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   UUCUAGUAAAAAUCAGGGCCAAGA   1   ||*|||||*||||||||||||||* targets:1644   AAAAUCAUCUUUAGUCCCGGUUCA   1667 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
AK288496.1	ncRNA:24   UUCUAGUAAAAAUCAGGGCCAAGA   1   ||*|||*|||||||||||||||=| targets:718   AAAAUCUUUUUUAGUCCCGGUUUU   741 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090040O05, full insert sequence	NA	coding protein	psRNATarget
AK288859.1	ncRNA:24   UUCUAGUAAAAAUCAGGGCCAAGA   1   =*|*|=|||**||||||||||||| targets:2129   GCGCUUAUUAGUAGUCCCGGUUCU   2152 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence	NA	coding protein	psRNATarget