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BaseInfo

ncRNA ID	novel_osa_miR541
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:22564533-22564709 [+]
Reference genome	IRGSP-1.0
Source	SRR1738244;SRR1743002;SRR1743006;SRR1849770;SRR2040382;SRR2040385;SRR2040387;SRR2040388;SRR2040392;SRR2040394;SRR2040396;SRR2040399;SRR2040400;SRR2040403;SRR2040404;SRR2040405;SRR2040409;SRR2040411;SRR2857728;SRR2857732;SRR2857733;SRR2857735;SRR2857736;SRR3123645;SRR3123648;SRR3123650;SRR3123651;SRR5049785;SRR1738209;SRR1738210;SRR1738226;SRR1738227;SRR1738235;SRR1738239;SRR1738240;SRR1738241
Length	24
Mature sequence(if miRNA)	1 - AGUUUUUGUUUGCACUGUUUGACC - 24
Stem-loop(if miRNA)	--                 U                          --UA  G  U   --UAUUUAUUUUU     A    CUU    AU   AGUUUUUGUUUGCACUG UUGACCACUCGUCUUAUUCAAAAAAG    UG AA UAU             UUGUG CUUA   UAUU  C   ||||||||||||||||| ||||||||||||||||||||||||||    || || |||             ||||| ||||   ||||   UCAAAAACGAACGUGAC AACUGGUGAGCAGAAUAAGUUUUUUU    AC UU AUA             AACAC GAAU   AUGA  C AC                 C                          UUUC  G  U   UUUUUUACUGUUC     -    UUC    AA
Stem-loop sequence	AGUUUUUGUUUGCACUGUUUGACCACUCGUCUUAUUCAAAAAAGUAUGGAAUUAUUAUUUAUUUUUUUGUGACUUACUUUAUUAUCCAAAGUACUUUAAGCACAACUUGUCAUUUUUUAUAUUUGCACUUUUUUUUUUGAAUAAGACGAGUGGUCAACCAGUGCAAGCAAAAACUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837708.1	ncRNA:24   CCAGUUUGUCACGUUUGUUUUUGA   1   |||||||||||||||=|||||||| targets:674   GGUCAAACAGUGCAAGCAAAAACU   697 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA220M04, full insert sequence	NA	coding protein	psRNATarget
AK288595.1	ncRNA:24   CCAGUUUGUCACGUUUGUUUUUGA   1   ||||||||=||||||=|||||||| targets:815   GGUCAAACGGUGCAAGCAAAAACU   838 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090051J16, full insert sequence	NA	coding protein	psRNATarget
XM_015790568.1	ncRNA:24   CCAGUUUGUCACGUUUGUUUUUGA   1   ||||||||=||||||=|||||||| targets:876   GGUCAAACGGUGCAAGCAAAAACU   899 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277036 (LOC107277036), mRNA	uncharacterized LOC107277036(Os07g0616850)	coding protein	psRNATarget
AK288846.1	ncRNA:24   CCAGUUUGUCACGUUUGUUUUUGA   1   |*|||||||||||||=|||||||| targets:63   GAUCAAACAGUGCAAGCAAAAACU   86 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090075E22, full insert sequence	NA	coding protein	psRNATarget
AK288977.1	ncRNA:24   CCAGUUUGUCACGUUUGUUUUUGA   1   |||||||||*|*|||||||||||| targets:1829   GGUCAAACAAUACAAACAAAAACU   1852 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090085K17, full insert sequence	NA	coding protein	psRNATarget