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BaseInfo

ncRNA ID	novel_osa_miR540
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:20645163-20645235 [+]
Reference genome	IRGSP-1.0
Source	SRR1738244
Length	24
Mature sequence(if miRNA)	1 - AGGUGUCGGUUCUAAAGAAAAACC - 24
Stem-loop(if miRNA)	--              AA              A      AGGUGUCGGUUCUA  GAAAAACCGGUACC AUAC   ||||||||||||||  |||||||||||||| |||G   UCCACAGCCAAGAU  UUUUUUGGCCGUGG UAUA UA              AA              A
Stem-loop sequence	AGGUGUCGGUUCUAAAGAAAAACCGGUACCAAUACGAUAUAGGUGCCGGUUUUUUAAUAGAACCGACACCUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK070927.1	ncRNA:24   CCAAAAA-GAAAUCUUGGCUGUGGA   1   |||||||-||*|||||||||||||| targets:1513   GGUUUUUUCUCUAGAACCGACACCU   1537 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023069B08, full insert sequence	NA	coding protein	psRNATarget
AK070414.1	ncRNA:24   CCAAAAAGAAAUCUUGGCUGUGGA   1   |*|||||||||||||||*|||||| targets:1209   GAUUUUUCUUUAGAACCAACACCU   1232 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023053H09, full insert sequence	NA	coding protein	psRNATarget
AK108608.1	ncRNA:24   CCAAAAAGAAAUCUUGGCUGUGGA   1   ||||||**||*||||||||||||| targets:148   GGUUUUAGUUAAGAACCGACACCU   171 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-146-H07, full insert sequence	NA	coding protein	psRNATarget