Search result

BaseInfo

ncRNA ID	novel_osa_miR539
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:20607789-20607852 [+]
Reference genome	IRGSP-1.0
Source	SRR1738244;SRR2040385
Length	20
Mature sequence(if miRNA)	1 - UUGUUUCCGAUCGUUGGAUC - 20
Stem-loop(if miRNA)	--                        UGG  A   UUGUUUCCGAUCGUUGGAUCUAGC   AC G   ||||||||||||||||||||||||   ||   AGCAAAGGCUAGCAACUUAGAUUG   UG A UU                        UUA  G
Stem-loop sequence	UUGUUUCCGAUCGUUGGAUCUAGCUGGACAGAGGUAUUGUUAGAUUCAACGAUCGGAAACGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI404119.1	ncRNA:20   CUAGGUUGCUAGCCUUUGUU   1   |||||||||||||||||=|| targets:102   GAUCCAACGAUCGGAAAUAA   121 Target Full Sequence	1.5	Sequence 2244 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236249.1	ncRNA:20   CUAGGUUGCUAGCCUUUGUU   1   |||||||||||||||||=|| targets:102   GAUCCAACGAUCGGAAAUAA   121 Target Full Sequence	1.5	Sequence 2244 from Patent EP2985353	NA	coding protein	psRNATarget
JB164580.1	ncRNA:20   CUAGGUUGCUAGCCUUUGUU   1   |||||||||||||||||=|| targets:102   GAUCCAACGAUCGGAAAUAA   121 Target Full Sequence	1.5	Sequence 2244 from Patent EP2559767	NA	coding protein	psRNATarget
AK108234.1	ncRNA:20   CUAGGUUGCUAGCCUUUGUU   1   ||||||||||||||||||=| targets:498   GAUCCAACGAUCGGAAACGA   517 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-140-G06, full insert sequence	NA	coding protein	psRNATarget
AK103106.1	ncRNA:20   CUAGGUUGCUAGCCUUUGUU   1   |||||||||||||||||=|| targets:1489   GAUCCAACGAUCGGAAAUAA   1508 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033118O22, full insert sequence	NA	coding protein	psRNATarget
XM_015765802.1	ncRNA:20   CUAGGUUGCUAGCCUUUGUU   1   |||||||||||||||||=|| targets:1488   GAUCCAACGAUCGGAAAUAA   1507 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group polygalacturonase (LOC4326679), mRNA	polygalacturonase(LOC4326679)	coding protein	psRNATarget
XM_015778221.1	ncRNA:20   CUAGGUUGCUAGCCUUUGUU   1   ||||||||||||||||||=| targets:3060   GAUCCAACGAUCGGAAACGA   3079 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X2, mRNA	wall-associated receptor kinase 3-like(LOC107278106)	coding protein	psRNATarget
XM_015778220.1	ncRNA:20   CUAGGUUGCUAGCCUUUGUU   1   ||||||||||||||||||=| targets:3111   GAUCCAACGAUCGGAAACGA   3130 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X1, mRNA	wall-associated receptor kinase 3-like(LOC107278106)	coding protein	psRNATarget
AK063705.1	ncRNA:20   CUAGGUUGCUAGCCUUUGUU   1   ||||||=||||=|||||||| targets:575   GAUCCAGCGAUUGGAAACAA   594 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-119-H03, full insert sequence	NA	coding protein	psRNATarget
XM_015783108.1	ncRNA:20   CUAGGUUGCUAGCCUUUGUU   1   ||||=|||||||||||||=| targets:965   GAUCUAACGAUCGGAAACGA   984 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277789 (LOC107277789), mRNA	uncharacterized LOC107277789(LOC107277789)	coding protein	psRNATarget
EF626940.1	ncRNA:20   CUAGGUUGCUAGCCUUUGUU   1   ||||||=||||=|||||||| targets:1081   GAUCCAGCGAUUGGAAACAA   1100 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds	NA	coding protein	psRNATarget
XM_015755547.1	ncRNA:20   CUAGGUUGCUAGCCUUUGUU   1   ||||||=||||=|||||||| targets:1556   GAUCCAGCGAUUGGAAACAA   1575 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group zinc finger protein WIP2 (LOC4347420), mRNA	zinc finger protein WIP2(LOC4347420)	coding protein	psRNATarget
HI403533.1	ncRNA:20   CUAGGUUGCUAGCCUUUGUU   1   ||*||||||||||||||||| targets:58   GAACCAACGAUCGGAAACAA   77 Target Full Sequence	1.0	Sequence 1658 from Patent EP2074227	NA	coding protein	psRNATarget
JB163994.1	ncRNA:20   CUAGGUUGCUAGCCUUUGUU   1   ||*||||||||||||||||| targets:58   GAACCAACGAUCGGAAACAA   77 Target Full Sequence	1.0	Sequence 1658 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235663.1	ncRNA:20   CUAGGUUGCUAGCCUUUGUU   1   ||*||||||||||||||||| targets:58   GAACCAACGAUCGGAAACAA   77 Target Full Sequence	1.0	Sequence 1658 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015779655.1	ncRNA:20   CUAGGUUGCUAGCCUUUGUU   1   *|||||||||||||||||=| targets:1555   AAUCCAACGAUCGGAAACGA   1574 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280684 (LOC107280684), transcript variant X1, mRNA	uncharacterized LOC107280684(LOC107280684)	coding protein	psRNATarget
AK070395.1	ncRNA:20   CUAGGUUGCUAGCCUUUGUU   1   ||||||*|||||||||||*| targets:13   GAUCCACCGAUCGGAAACCA   32 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023050F09, full insert sequence	NA	coding protein	psRNATarget
XM_015764713.1	ncRNA:20   CUAGGUUGCUAGCCUUUGUU   1   ||||||*|||||||||||*| targets:31   GAUCCACCGAUCGGAAACCA   50 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group WEB family protein At5g55860 (LOC4351956), mRNA	WEB family protein At5g55860(LOC4351956)	coding protein	psRNATarget