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BaseInfo

ncRNA ID	novel_osa_miR535
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:3337359-3337529 [+]
Reference genome	IRGSP-1.0
Source	SRR1738244;SRR4407775
Length	22
Mature sequence(if miRNA)	1 - UUUUUUCUUGCAACGUUUGACC - 22
Stem-loop(if miRNA)	U    U                    A          UUUU     C    A  AAAAACGAAAAAG     -    AAGUA    A  UUUU CUUGCAACGUUUGACCACUC UCUUAUUUAA    UUUUG AAAU UA             UUGUG CUUA     CUGU G  |||| |||||||||||||||||||| ||||||||||    ||||| |||| ||             ||||| ||||     |||| A  AAAA GAACGUUGCAAACUGGUGAG AGAAUAAGUU    AAGAC UUUA AU             AACAC GAAU     GAUA U A    C                    C          UUUU     -    -  AAUUAAUAAAAUA     U    ---GA    A
Stem-loop sequence	UUUUUUCUUGCAACGUUUGACCACUCAUCUUAUUUAAUUUUUUUUGCAAAUAUAAAAAACGAAAAAGUUGUGCUUAAAGUACUGUAGAUAAUAGAGUAAGUCACAAAUAAAAUAAUUAAUAAUUUCAGAAUUUUUUGAAUAAGACGAGUGGUCAAACGUUGCAAGCAAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK102017.1	ncRNA:22   CCAGUUUGCAACGUUCUUUUUU   1   ||||||||||||||||*||||| targets:1059   GGUCAAACGUUGCAAGCAAAAA   1080 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033080F19, full insert sequence	NA	coding protein	psRNATarget
AK100009.1	ncRNA:22   CCAGUUUGCAACGUUCUUUUUU   1   ||||||||||||||||*||||| targets:1040   GGUCAAACGUUGCAAGCAAAAA   1061 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013138B09, full insert sequence	NA	coding protein	psRNATarget
AK064773.1	ncRNA:22   CCAGUUUGCAACGUUCUUUUUU   1   ||||||||||||||||*||||| targets:3060   GGUCAAACGUUGCAAGCAAAAA   3081 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013000A22, full insert sequence	NA	coding protein	psRNATarget
AK288920.1	ncRNA:22   CCAGUUUGCAACGUUCUUUUUU   1   ||||||||||||||||*||||| targets:4056   GGUCAAACGUUGCAAGCAAAAA   4077 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
AK288319.1	ncRNA:22   CCAGUUUGCAACGUUCUUUUUU   1   ||||||||||||||||*||||| targets:1854   GGUCAAACGUUGCAAGUAAAAA   1875 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090021O08, full insert sequence	NA	coding protein	psRNATarget
HI404548.1	ncRNA:22   CCAGUUUGCAACGUUCUUUUUU   1   |||||||=||||||||*||||| targets:159   GGUCAAAUGUUGCAAGCAAAAA   180 Target Full Sequence	2.5	Sequence 2673 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236678.1	ncRNA:22   CCAGUUUGCAACGUUCUUUUUU   1   |||||||=||||||||*||||| targets:159   GGUCAAAUGUUGCAAGCAAAAA   180 Target Full Sequence	2.5	Sequence 2673 from Patent EP2985353	NA	coding protein	psRNATarget
JB165009.1	ncRNA:22   CCAGUUUGCAACGUUCUUUUUU   1   |||||||=||||||||*||||| targets:159   GGUCAAAUGUUGCAAGCAAAAA   180 Target Full Sequence	2.5	Sequence 2673 from Patent EP2559767	NA	coding protein	psRNATarget
AK289089.1	ncRNA:22   CCAGUUUGCAACGUUCUUUUUU   1   |||||||=||||||||*||||| targets:1454   GGUCAAAUGUUGCAAGCAAAAA   1475 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090095N08, full insert sequence	NA	coding protein	psRNATarget
XM_015790883.1	ncRNA:22   CCAGUUUGCAACGUUCUUUUUU   1   |||||||=||||||||*||||| targets:1915   GGUCAAAUGUUGCAAGCAAAAA   1936 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 7-deoxyloganetic acid glucosyltransferase (LOC9267967), mRNA	7-deoxyloganetic acid glucosyltransferase(LOC9267967)	coding protein	psRNATarget
XM_015773783.1	ncRNA:22   CCAGUUUGCAACGUUCUUUUUU   1   |*||||||||||||||*||||| targets:1980   GAUCAAACGUUGCAAGCAAAAA   2001 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X1, mRNA	alanine aminotransferase 2(LOC9266500)	coding protein	psRNATarget
XM_015773784.1	ncRNA:22   CCAGUUUGCAACGUUCUUUUUU   1   |*||||||||||||||*||||| targets:2074   GAUCAAACGUUGCAAGCAAAAA   2095 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X2, mRNA	alanine aminotransferase 2(LOC9266500)	coding protein	psRNATarget