Search result

BaseInfo

ncRNA ID	novel_osa_miR534
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:3370029-3370126 [-]
Reference genome	IRGSP-1.0
Source	SRR1738244;SRR2098560;SRR2890846;SRR5049780;SRR1738227
Length	24
Mature sequence(if miRNA)	1 - AUAAAUGUGGACAAUGCUAGAAAG - 24
Stem-loop(if miRNA)	--           CU      CA      U                   U   UUCUAGCAUUG  CAUAUU  UAUAGA GUUAAUGAAUCUAGAUAUA A   |||||||||||  ||||||  |||||| |||||||||||||||||||   AAGAUCGUAAC  GUGUAA  AUAUCU CAAUUACUUAGAUCUGUGU U GA           AG      --      U                   G
Stem-loop sequence	UUCUAGCAUUGCUCAUAUUCAUAUAGAUGUUAAUGAAUCUAGAUAUAUAUGUGUGUCUAGAUUCAUUAACUUCUAUAAAUGUGGACAAUGCUAGAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015768353.1	ncRNA:24   GAAAGAUCGUAACAGGUGUAAAUA   1   |||||||||||||||||||||||| targets:1654   CUUUCUAGCAUUGUCCACAUUUAU   1677 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X2, mRNA	protein SRG1(LOC4329022)	coding protein	psRNATarget
XM_015768352.1	ncRNA:24   GAAAGAUCGUAACAGGUGUAAAUA   1   |||||||||||||||||||||||| targets:1642   CUUUCUAGCAUUGUCCACAUUUAU   1665 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X1, mRNA	protein SRG1(LOC4329022)	coding protein	psRNATarget
XM_015768356.1	ncRNA:24   GAAAGAUCGUAACAGGUGUAAAUA   1   |||||||||||||||||||||||| targets:1632   CUUUCUAGCAUUGUCCACAUUUAU   1655 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X5, mRNA	protein SRG1(LOC4329022)	coding protein	psRNATarget
AK065581.1	ncRNA:24   GAAAGAUCGUAACAGGUGUAAAUA   1   |||||||||||||||||||||||| targets:1604   CUUUCUAGCAUUGUCCACAUUUAU   1627 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013034J09, full insert sequence	NA	coding protein	psRNATarget
XM_015768355.1	ncRNA:24   GAAAGAUCGUAACAGGUGUAAAUA   1   |||||||||||||||||||||||| targets:1598   CUUUCUAGCAUUGUCCACAUUUAU   1621 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X4, mRNA	protein SRG1(LOC4329022)	coding protein	psRNATarget
XM_015768354.1	ncRNA:24   GAAAGAUCGUAACAGGUGUAAAUA   1   |||||||||||||||||||||||| targets:1584   CUUUCUAGCAUUGUCCACAUUUAU   1607 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X3, mRNA	protein SRG1(LOC4329022)	coding protein	psRNATarget
XM_015768357.1	ncRNA:24   GAAAGAUCGUAACAGGUGUAAAUA   1   |||||||||||||||||||||||| targets:1548   CUUUCUAGCAUUGUCCACAUUUAU   1571 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group protein SRG1 (LOC4329022), transcript variant X6, mRNA	protein SRG1(LOC4329022)	coding protein	psRNATarget
XM_015781389.1	ncRNA:24   GAAAGAUCGUAACAGGUGUAAAUA   1   ||||||||=||||||||||||||| targets:748   CUUUCUAGUAUUGUCCACAUUUAU   771 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X1, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015781390.1	ncRNA:24   GAAAGAUCGUAACAGGUGUAAAUA   1   ||||||||=||||||||||||||| targets:748   CUUUCUAGUAUUGUCCACAUUUAU   771 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X2, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
AK288826.1	ncRNA:24   GAAAGAUCGUAACAGGUGUAAAUA   1   |||||||||||||*|||||||||| targets:1370   CUUUCUAGCAUUGCCCACAUUUAU   1393 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090073I23, full insert sequence	NA	coding protein	psRNATarget
CT835628.1	ncRNA:24   GAAAGAUCGUAACAGGUGUAAAUA   1   |||||||||||||||||||||*|| targets:1170   CUUUCUAGCAUUGUCCACAUUCAU   1193 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA042P11, full insert sequence	NA	coding protein	psRNATarget
AK242012.1	ncRNA:24   GAAAGAUCGUAACAGGUGUAAAUA   1   |||||||*|||||||||||||*|| targets:716   CUUUCUAUCAUUGUCCACAUUCAU   739 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075106H22, full insert sequence	NA	coding protein	psRNATarget
HI403946.1	ncRNA:24   GAAAGAUCGUAACAGGUGUAAAUA   1   |||*|||||||||||||||||*|| targets:13   CUUCCUAGCAUUGUCCACAUUCAU   36 Target Full Sequence	1.5	Sequence 2071 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236076.1	ncRNA:24   GAAAGAUCGUAACAGGUGUAAAUA   1   |||*|||||||||||||||||*|| targets:13   CUUCCUAGCAUUGUCCACAUUCAU   36 Target Full Sequence	1.5	Sequence 2071 from Patent EP2985353	NA	coding protein	psRNATarget
JB164407.1	ncRNA:24   GAAAGAUCGUAACAGGUGUAAAUA   1   |||*|||||||||||||||||*|| targets:13   CUUCCUAGCAUUGUCCACAUUCAU   36 Target Full Sequence	1.5	Sequence 2071 from Patent EP2559767	NA	coding protein	psRNATarget
AK318560.1	ncRNA:24   GAAAGAUCGUAACAGGUGUAAAUA   1   |*||*|||||||*||||||||||| targets:1126   CAUUAUAGCAUUUUCCACAUUUAU   1149 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J075170N13, full insert sequence	NA	coding protein	psRNATarget
XM_015785393.1	ncRNA:24   GAAAGAUCGUAACAGGUGUAAAUA   1   |*||*|||||||*||||||||||| targets:1564   CAUUAUAGCAUUUUCCACAUUUAU   1587 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group phosphoglycerate mutase-like protein AT74H (LOC4339877), mRNA	phosphoglycerate mutase-like protein AT74H(LOC4339877)	coding protein	psRNATarget
AK100993.1	ncRNA:24   GAAAGAUCGUAACAGGUGUAAAUA   1   ||||*||*|||||*|||||||||| targets:1166   CUUUAUAACAUUGCCCACAUUUAU   1189 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023146F15, full insert sequence	NA	coding protein	psRNATarget