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BaseInfo

ncRNA ID	novel_osa_miR532
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:21713919-21714091 [+]
Reference genome	IRGSP-1.0
Source	SRR1738244
Length	24
Mature sequence(if miRNA)	1 - UUUUUACUUGCACUGUUUGACCAC - 24
Stem-loop(if miRNA)	--     A                 C G                UUG  U    AUAAAAAACAAAAGG     -  UAAAG       G   UUUUU CUUGCACUGUUUGACCA U GUCUUAUUCAAAAAAA   UG AAAU               UUGUG CU     UACUUUG A   ||||| ||||||||||||||||| | ||||||||||||||||   || ||||               ||||| ||     ||||||| U   AAAAA GAAUGUGACAAACUGGU A CAGAAUAAGUUUUUUU   AC UUUA               AACAC GA     AUGAAAU A UG     C                 A G                -UA  -    AUAAUAAAUAAAAUA     U  -----       A
Stem-loop sequence	UUUUUACUUGCACUGUUUGACCACUGGUCUUAUUCAAAAAAAUUGUGUAAAUAUAAAAAACAAAAGGUUGUGCUUAAAGUACUUUGGAUAAUAAAGUAAGUCACAAAUAAAAUAAAUAAUAAUUUCAAUUUUUUUUGAAUAAGACGAAUGGUCAAACAGUGUAAGCAAAAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837708.1	ncRNA:24   CACCAGUUUGUCACGUUCAUUUUU   1   ||||||||||||||||||*||||| targets:672   GUGGUCAAACAGUGCAAGCAAAAA   695 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA220M04, full insert sequence	NA	coding protein	psRNATarget
CT837645.1	ncRNA:24   CACCAGUUUGUCACGUUCAUUUUU   1   *||||||||||||||||||||||* targets:609   AUGGUCAAACAGUGCAAGUAAAAU   632 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063B15, full insert sequence	NA	coding protein	psRNATarget
AK288595.1	ncRNA:24   CACCAGUUUGUCACGUUCAUUUUU   1   ||||||||||=|||||||*||||| targets:813   GUGGUCAAACGGUGCAAGCAAAAA   836 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090051J16, full insert sequence	NA	coding protein	psRNATarget
XM_015790568.1	ncRNA:24   CACCAGUUUGUCACGUUCAUUUUU   1   ||||||||||=|||||||*||||| targets:874   GUGGUCAAACGGUGCAAGCAAAAA   897 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277036 (LOC107277036), mRNA	uncharacterized LOC107277036(Os07g0616850)	coding protein	psRNATarget
AK289013.1	ncRNA:24   CACCAGUUUGUCACGUUCAUUUUU   1   |||||=||||||||||||*||||| targets:1531   GUGGUUAAACAGUGCAAGCAAAAA   1554 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence	NA	coding protein	psRNATarget
AK288319.1	ncRNA:24   CACCAGUUUGUCACGUUCAUUUUU   1   ||||||||||=*|||||||||||| targets:1852   GUGGUCAAACGUUGCAAGUAAAAA   1875 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090021O08, full insert sequence	NA	coding protein	psRNATarget
AK068624.1	ncRNA:24   CACCAGUUUGUCACGUUCAUUUUU   1   ||||||||||||||||||*||||* targets:189   GUGGUCAAACAGUGCAAGCAAAAU   212 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013153F11, full insert sequence	NA	coding protein	psRNATarget
AK288846.1	ncRNA:24   CACCAGUUUGUCACGUUCAUUUUU   1   |||*||||||||||||||*||||| targets:61   GUGAUCAAACAGUGCAAGCAAAAA   84 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090075E22, full insert sequence	NA	coding protein	psRNATarget
AK066510.1	ncRNA:24   CACCAGUUUGUCACGUUCAUUUUU   1   *|||||||||||||||||*||||* targets:1428   AUGGUCAAACAGUGCAAGCAAAAU   1451 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013068L16, full insert sequence	NA	coding protein	psRNATarget
AK288203.1	ncRNA:24   CACCAGUUUGUCACGUUCAUUUUU   1   *|||||||||||||||||*||||* targets:1707   AUGGUCAAACAGUGCAAGCAAAAU   1730 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090008K12, full insert sequence	NA	coding protein	psRNATarget