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BaseInfo

ncRNA ID	novel_osa_miR523
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:8838883-8839054 [-]
Reference genome	IRGSP-1.0
Source	SRR1738244;SRR1849765;SRR1849774;SRR2040386;SRR2040401
Length	21
Mature sequence(if miRNA)	152 - UUUUUUAACAAACGUUUGACC - 172
Stem-loop(if miRNA)	--         A           U  C           AAAAA         U   -CAUU     -   UG  ----------       U   UUUUUUAAC AACGUUUGACC UU GUUUUAUUUAA     UUUAUGUAA UAU     UAUUU UAU  UG          AUUUGAU U   ||||||||| ||||||||||| || |||||||||||     ||||||||| |||     ||||| |||  ||          ||||||| A   GAAAAAUUG UUGCAAACUGG AA CAGAAUAAAUU     AAAUACGUU AUA     AUGAA AUA  AC          UAAACUA U CU         G           U  A           -AAAA         U   UUUUU     U   GU  GAAUUUCUUG       C
Stem-loop sequence	UUUUUUAACAAACGUUUGACCUUUCGUUUUAUUUAAAAAAAUUUAUGUAAUUAUCAUUUAUUUUAUUGUGAUUUGAUUUAUCAUCAAAUGUUCUUUAAGCAUGAUAUAAGUAUUUUUAUAUUUGCAUAAAAAAAUUAAAUAAGACAAAUGGUCAAACGUUGGUUAAAAAGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT835080.1	ncRNA:21   CCAGUUUGCAAACAAUUUUUU   1   ||||||||||||||*|||||= targets:1134   GGUCAAACGUUUGUCAAAAAG   1154 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN071I07, full insert sequence	NA	coding protein	psRNATarget
AK288488.1	ncRNA:21   CCAGUUUGCAAACAAUUUUUU   1   *|||||||||||*|||||||* targets:2554   UGUCAAACGUUUCUUAAAAAU   2574 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090040I02, full insert sequence	NA	coding protein	psRNATarget
CT834259.1	ncRNA:21   CCAGUUUGCAAACAAUUUUUU   1   |*|||||||||*||||||||= targets:839   GAUCAAACGUUGGUUAAAAAG   859 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA044D20, full insert sequence	NA	coding protein	psRNATarget
XM_015788430.1	ncRNA:21   CCAGUUUGCAAACAAUUUUUU   1   |*|||||||||*||||||||= targets:1483   GAUCAAACGUUGGUUAAAAAG   1503 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X3, mRNA	12-oxophytodienoate reductase 1(LOC4340490)	coding protein	psRNATarget
XM_015788428.1	ncRNA:21   CCAGUUUGCAAACAAUUUUUU   1   |*|||||||||*||||||||= targets:1625   GAUCAAACGUUGGUUAAAAAG   1645 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X1, mRNA	12-oxophytodienoate reductase 1(LOC4340490)	coding protein	psRNATarget
AK288459.1	ncRNA:21   CCAGUUUGCAAACAAUUUUUU   1   |*|||||||||||*||||||= targets:277   GAUCAAACGUUUGCUAAAAAG   297 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090035G07, full insert sequence	NA	coding protein	psRNATarget