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BaseInfo

ncRNA ID novel_osa_miR522
Species Oryza sativa
Class miRNA
Genome position Chr6:17598457-17598534 [-]
Reference genome IRGSP-1.0
Source SRR1738244;SRR1743006;SRR2857735;SRR1738216;SRR1738237
Length 24
Mature sequence(if miRNA) 55 - ACUUAGGACAAGGACGUGGCAUCC - 78
Stem-loop(if miRNA) --        CA      U            CCAACCAU
  ACUUAGGA  AGGACG GGCAUCCUAUUA        C
  ||||||||  |||||| ||||||||||||
  UGGAUCCU  UCCUGC CCGUAGGAUAAU        G
GA        AC      U            UAAAGCAC
Stem-loop sequence ACUUAGGACAAGGACGUGGCAUCCUAUUACCAACCAUCGCACGAAAUUAAUAGGAUGCCUCGUCCUCAUCCUAGGUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015760145.1
ncRNA:24   CCUACGGUGCAGGAACAGGAUUCA   1
  |||**=|=|*||||||||||||||
targets:1782   GGAACUCGCCUCCUUGUCCUAAGU   1805

3.0 PREDICTED: Oryza sativa Japonica Group probable tRNA-splicing endonuclease subunit Sen2 (LOC4350867), mRNA probable tRNA-splicing endonuclease subunit Sen2(LOC4350867) coding protein psRNATarget