Search result

BaseInfo

ncRNA ID	novel_osa_miR510
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:26802205-26802282 [+]
Reference genome	IRGSP-1.0
Source	SRR1738244;SRR1743000;SRR2857731;SRR3123648;SRR3123650;SRR3123651;SRR1738209;SRR1738235;SRR1738239;SRR1738240
Length	21
Mature sequence(if miRNA)	1 - UCUGAAGAGCUGCAAAGCAUU - 21
Stem-loop(if miRNA)	-UC             A          C    --    G    UGAAGAGCUGCAA GCAUUAUAUA UUUU  UUUA A    ||||||||||||| |||||||||| ||||  |||| U    ACUUCUCGACGUU CGUAAUAUAU AAAG  AGGU A AAA             C          A    UU    A
Stem-loop sequence	UCUGAAGAGCUGCAAAGCAUUAUAUACUUUUUUUAGAUAAUGGAUUGAAAAUAUAUAAUGCCUUGCAGCUCUUCAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK241656.1	ncRNA:21   UUACGAAACGUCGAGAAGUCU   1   =||||**|||||||||||||= targets:411   GAUGCCCUGCAGCUCUUCAGG   431 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J065191E22, full insert sequence	NA	coding protein	psRNATarget
XM_015765259.1	ncRNA:21   UUACGAAACGUCGAGAAGUCU   1   =||||**|||||||||||||= targets:390   GAUGCCCUGCAGCUCUUCAGG   410 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g09220, mitochondrial (LOC4327484), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At1g09220, mitochondrial(LOC4327484)	coding protein	psRNATarget
XM_015765252.1	ncRNA:21   UUACGAAACGUCGAGAAGUCU   1   =||||**|||||||||||||= targets:390   GAUGCCCUGCAGCUCUUCAGG   410 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g09220, mitochondrial (LOC4327484), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At1g09220, mitochondrial(LOC4327484)	coding protein	psRNATarget
XM_015765266.1	ncRNA:21   UUACGAAACGUCGAGAAGUCU   1   =||||**|||||||||||||= targets:390   GAUGCCCUGCAGCUCUUCAGG   410 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g09220, mitochondrial (LOC4327484), transcript variant X4, mRNA	pentatricopeptide repeat-containing protein At1g09220, mitochondrial(LOC4327484)	coding protein	psRNATarget