ncRNA ID | novel_osa_miR503 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr4:16545702-16545781 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR1555746;SRR2097779;SRR1556014;SRR1654490;SRR1654491 |
Length | 21 |
Mature sequence(if miRNA) | 60 - UGUAUGUGGUCAAUGCUAGAA - 80 |
Stem-loop(if miRNA) |
--         C      U   U            A  CU   CUAGCAUUG CCACAU CAU UAGAUGUUAAUG AU  A   ||||||||| |||||| ||| |||||||||||| ||   GAUCGUAAC GGUGUA GUA AUCUACAAUUAU UA  G AA         U      U   U            A  CA |
Stem-loop sequence | CUAGCAUUGCCCACAUUCAUUUAGAUGUUAAUGAAUCUAGACAUAUAUUAACAUCUAUAUGUAUGUGGUCAAUGCUAGAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_015774474.1 |
|
1.5 | PREDICTED: Oryza sativa Japonica Group DIMBOA UDP-glucosyltransferase BX8 (LOC4334628), mRNA | DIMBOA UDP-glucosyltransferase BX8(LOC4334628) | coding protein | psRNATarget | |||||||||
HI404563.1 |
|
2.5 | Sequence 2688 from Patent EP2074227 | NA | coding protein | psRNATarget | |||||||||
JB165024.1 |
|
2.5 | Sequence 2688 from Patent EP2559767 | NA | coding protein | psRNATarget | |||||||||
LQ236693.1 |
|
2.5 | Sequence 2688 from Patent EP2985353 | NA | coding protein | psRNATarget |