Search result

BaseInfo

ncRNA ID novel_osa_miR503
Species Oryza sativa
Class miRNA
Genome position Chr4:16545702-16545781 [+]
Reference genome IRGSP-1.0
Source SRR1555746;SRR2097779;SRR1556014;SRR1654490;SRR1654491
Length 21
Mature sequence(if miRNA) 60 - UGUAUGUGGUCAAUGCUAGAA - 80
Stem-loop(if miRNA) --         C      U   U            A  CU
  CUAGCAUUG CCACAU CAU UAGAUGUUAAUG AU  A
  ||||||||| |||||| ||| |||||||||||| ||
  GAUCGUAAC GGUGUA GUA AUCUACAAUUAU UA  G
AA         U      U   U            A  CA
Stem-loop sequence CUAGCAUUGCCCACAUUCAUUUAGAUGUUAAUGAAUCUAGACAUAUAUUAACAUCUAUAUGUAUGUGGUCAAUGCUAGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015774474.1
ncRNA:21   AAGAUCGUAACUGGUGUAUGU   1
  |||||||||||*|||||||||
targets:1524   UUCUAGCAUUGUCCACAUACA   1544

1.5 PREDICTED: Oryza sativa Japonica Group DIMBOA UDP-glucosyltransferase BX8 (LOC4334628), mRNA DIMBOA UDP-glucosyltransferase BX8(LOC4334628) coding protein psRNATarget
HI404563.1
ncRNA:21   AAGAUCGUAACUGGUGUAUGU   1
  ||=|||||||||||||||*||
targets:8   UUUUAGCAUUGACCACAUUCA   28

2.5 Sequence 2688 from Patent EP2074227 NA coding protein psRNATarget
JB165024.1
ncRNA:21   AAGAUCGUAACUGGUGUAUGU   1
  ||=|||||||||||||||*||
targets:8   UUUUAGCAUUGACCACAUUCA   28

2.5 Sequence 2688 from Patent EP2559767 NA coding protein psRNATarget
LQ236693.1
ncRNA:21   AAGAUCGUAACUGGUGUAUGU   1
  ||=|||||||||||||||*||
targets:8   UUUUAGCAUUGACCACAUUCA   28

2.5 Sequence 2688 from Patent EP2985353 NA coding protein psRNATarget