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BaseInfo

ncRNA ID novel_osa_miR502
Species Oryza sativa
Class miRNA
Genome position Chr4:20340395-20340523 [-]
Reference genome IRGSP-1.0
Source SRR1738244;SRR2099567;SRR2099568;SRR2099745;SRR2857734;SRR5351738;SRR5351739
Length 24
Mature sequence(if miRNA) 1 - AUGAGGUUGGUUUAUUUUGGGACG - 24
Stem-loop(if miRNA) --             A   A     A    A           A     --         AACACG
  UCCCAAAAUAAAC AAC UCGUG UAGG UGUGACACAUC UAGUA  ACGAGUCUG      U
  ||||||||||||| ||| ||||| |||| ||||||||||| |||||  |||||||||      A
  AGGGUUUUAUUUG UUG AGUAU AUUU ACACUGUGUAG AUUAU  UGCUUAGAC      G
GC             G   G     G    A           G     GU         CUAUAA
Stem-loop sequence UCCCAAAAUAAACAAACAUCGUGAUAGGAUGUGACACAUCAUAGUAACGAGUCUGAACACGUAGAAUAUCCAGAUUCGUUGUAUUAGGAUGUGUCACAAUUUAGUAUGAGGUUGGUUUAUUUUGGGACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK111475.1
ncRNA:24   GCAGGGUUUUAUUUGGUUGGAGUA   1
  =*||||||||||||||||||||||
targets:1260   UAUCCCAAAAUAAACCAACCUCAU   1283

0.0 Oryza sativa Japonica Group cDNA clone:002-183-F05, full insert sequence NA coding protein psRNATarget
AK119335.1
ncRNA:24   GCAGGGUUUUAUUUGGUUGGAGUA   1
  =*||||||||||||||||||||||
targets:1090   UAUCCCAAAAUAAACCAACCUCAU   1113

0.0 Oryza sativa Japonica Group cDNA clone:001-131-C06, full insert sequence NA coding protein psRNATarget