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BaseInfo

ncRNA ID novel_osa_miR500
Species Oryza sativa
Class miRNA
Genome position Chr4:21760755-21760916 [-]
Reference genome IRGSP-1.0
Source SRR1738244;SRR1742992;SRR2040382;SRR2040384;SRR2040391;SRR1609314;SRR1609317;SRR1738209;SRR1738219
Length 24
Mature sequence(if miRNA) 139 - AUACCCGUCGACAAGGAUACACCC - 162
Stem-loop(if miRNA) AUACCCGUCGACAA G       C       CUUCAUUAAUCUUA       -UCGG         UC  UG ---      AAAAGU    UG  U
              G AUACACC GUGAUGA              AUAUAUA     UCUAUUCUU  AG  U   GCUUAU      AGGG  UA G
              | ||||||| |||||||              |||||||     |||||||||  ||  |   ||||||      ||||  ||
              C UAUGUGG UAUUGCU              UGUGUGU     GGAUAGGAA  UC  G   UGAGUG      UUUU  GU U
-------------- G       U       --------------       UUAUA         -U  GU GAG      -GGGAU    GU  U
Stem-loop sequence AUACCCGUCGACAAGGAUACACCCGUGAUGACUUCAUUAAUCUUAAUAUAUAUCGGUCUAUUCUUUCAGUGUGCUUAUAAAAGUAGGGUGUAUGUUUGUGUUUUUAGGGGUGAGUGAGGUGCUUAAGGAUAGGAUAUUUGUGUGUUCGUUAUUGGUGUAUGC