Search result

BaseInfo

ncRNA ID	novel_osa_miR496
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:481954-482106 [-]
Reference genome	IRGSP-1.0
Source	SRR1738244;SRR1742988;SRR1743006;SRR1849765;SRR1849767;SRR2040381;SRR2040383;SRR2040388;SRR2040390;SRR2040391;SRR2040398;SRR2040399;SRR2040401;SRR2040402;SRR2040403;SRR2040404;SRR2040407;SRR2040410;SRR3123630;SRR5351737;SRR5351738;SRR5351739;SRR1738209;SRR1738214;SRR1738225
Length	24
Mature sequence(if miRNA)	1 - AUCUCGAGGUACUUUUUGUUGGAC - 24
Stem-loop(if miRNA)	--     C              GC    G    U  CA               CAU              UGGACAA   CUAAC AAAAGUAUCUCGAG  ACUG UACU CA  GUACUAAAUCGUUUU   UUGUUGGAUCUAAC       G   ||||| ||||||||||||||  |||| |||| ||  |||||||||||||||   ||||||||||||||       A   GGUUG UUUUCAUGGAGCUC  UGGC AUGA GU  CAUGGUUUAGCAAAA   AGCAACCUAGAUUG       U CA     U              UA    -    -  AC               AUU              UUAUAGA
Stem-loop sequence	CUAACCAAAAGUAUCUCGAGGCACUGGUACUUCACAGUACUAAAUCGUUUUCAUUUGUUGGAUCUAACUGGACAAGAUAGAUAUUGUUAGAUCCAACGAUUAAAAACGAUUUGGUACCAUGAGUACGGUAUCUCGAGGUACUUUUUGUUGGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403533.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCUA   1   ||||||||||||||||||||||=| targets:10   GUCCAACAAAAAGUACCUCGAGGU   33 Target Full Sequence	1.5	Sequence 1658 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235663.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCUA   1   ||||||||||||||||||||||=| targets:10   GUCCAACAAAAAGUACCUCGAGGU   33 Target Full Sequence	1.5	Sequence 1658 from Patent EP2985353	NA	coding protein	psRNATarget
JB163994.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCUA   1   ||||||||||||||||||||||=| targets:10   GUCCAACAAAAAGUACCUCGAGGU   33 Target Full Sequence	1.5	Sequence 1658 from Patent EP2559767	NA	coding protein	psRNATarget
AK107667.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCUA   1   ||||||||||||*||||||||||| targets:1055   GUCCAACAAAAAAUACCUCGAGAU   1078 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-131-H04, full insert sequence	NA	coding protein	psRNATarget
XM_015755204.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCUA   1   ||||||||||||*||||||||||| targets:1102   GUCCAACAAAAAAUACCUCGAGAU   1125 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347453 (LOC4347453), mRNA	uncharacterized LOC4347453(LOC4347453)	coding protein	psRNATarget
XM_015794267.1	ncRNA:24   CAGGUUGUUUUUCAUGGAGCUCUA   1   *||*=|=||||||*|||||||||| targets:759   UUCGGAUAAAAAGGACCUCGAGAU   782 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription factor GTE9 (LOC4344569), mRNA	transcription factor GTE9(LOC4344569)	coding protein	psRNATarget