Search result

BaseInfo

ncRNA ID	novel_osa_miR494
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:20706072-20706214 [+]
Reference genome	IRGSP-1.0
Source	SRR1738244;SRR1742991;SRR1742994;SRR1743000;SRR1743006;SRR1849774;SRR2040382;SRR2040384;SRR2040385;SRR2040386;SRR2040389;SRR2040390;SRR2040391;SRR2040393;SRR2040394;SRR2040395;SRR2040396;SRR2040399;SRR2040400;SRR2040401;SRR2040403;SRR2040405;SRR2040406;SRR2040408;SRR2040410;SRR2890862;SRR3123650;SRR1609314;SRR1609316;SRR1609317;SRR1738212;SRR1738217;SRR1738227;SRR1738239
Length	24
Mature sequence(if miRNA)	1 - AGAUUCCGCCUGUAAACUACGAGA - 24
Stem-loop(if miRNA)	---A    CC  C      C              A  A          AUC      ----UA    ----A    UA     GAUU  GC UGUAAA UACGAGACGAAUCU UU AGCUUAAUUA   CAUCAU      GCAA     UGUU  C     ||||  || |||||| |||||||||||||| || ||||||||||   ||||||      ||||     ||||     CUAA  CG ACAUUU AUGCUCUGCUUAGA AA UCGGAUUAAU   GUAGUA      UGUU     ACGA  U CGUG    -A  U      A              A  C          ---      CUAAAC    AUACC    UG
Stem-loop sequence	AGAUUCCGCCUGUAAACUACGAGACGAAUCUAUUAAGCUUAAUUAAUCCAUCAUUAGCAAAUGUUUACUGUAGCACCAUAUUGUCAAAUCAUGAUGUAAUUAGGCUCAAAAGAUUCGUCUCGUAAUUUACAUGCAAAUCGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK099913.1	ncRNA:24   AGAGCAUCAAAUGUCCGCCUUAGA   1   |||||*|||||||||||||||||| targets:806   UCUCGCAGUUUACAGGCGGAAUCU   829 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013116E13, full insert sequence	NA	coding protein	psRNATarget
AK067578.1	ncRNA:24   AGAGCAUCAAAUGUCCGCCUUAGA   1   |||||*|||||||||||||||||| targets:1773   UCUCGCAGUUUACAGGCGGAAUCU   1796 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence	NA	coding protein	psRNATarget
AK288682.1	ncRNA:24   AGAGCAUCAAAUGUCCGCCUUAGA   1   |||||*|||||||||||||||||| targets:446   UCUCGCAGUUUACAGGCGGAAUCU   469 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090059I11, full insert sequence	NA	coding protein	psRNATarget
AM778048.1	ncRNA:24   AGAGCAUCAAAUGUCCGCCUUAGA   1   |||||*|||||||||||||||||| targets:76   UCUCGCAGUUUACAGGCGGAAUCU   99 Target Full Sequence	1.0	Oryza sativa Japonica Group mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar Azucena	NA	coding protein	psRNATarget
AK064922.1	ncRNA:24   AGAGCAUCAAAUGUCCGCCUUAGA   1   |||||*|||||||||||||||||| targets:2049   UCUCGCAGUUUACAGGCGGAAUCU   2072 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013000N12, full insert sequence	NA	coding protein	psRNATarget
XM_015764825.1	ncRNA:24   AGAGCAUCAAAUGUCCGCCUUAGA   1   |||||*|||||||||||||||||| targets:76   UCUCGCAGUUUACAGGCGGAAUCU   99 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group pre-mRNA-splicing factor CWC22 homolog (LOC4351904), mRNA	pre-mRNA-splicing factor CWC22 homolog(LOC4351904)	coding protein	psRNATarget
CT837862.1	ncRNA:24   AGAGCAUCAAAUGUCCGCCUUAGA   1   |||||*||||||||||=||||||| targets:919   UCUCGCAGUUUACAGGUGGAAUCU   942 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA123J02, full insert sequence	NA	coding protein	psRNATarget
XM_015769825.1	ncRNA:24   AGAGCAUCAAAUGUCCGCCUUAGA   1   |||||*||||||=||||||||||| targets:730   UCUCGCAGUUUAUAGGCGGAAUCU   753 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein At4g30940 (LOC4329965), mRNA	BTB/POZ domain-containing protein At4g30940(LOC4329965)	coding protein	psRNATarget
AK288216.1	ncRNA:24   AGAGCAUCAAAUGUCCGCCUUAGA   1   |||||*||||||=||||||||||| targets:735   UCUCGCAGUUUAUAGGCGGAAUCU   758 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090011C22, full insert sequence	NA	coding protein	psRNATarget
CT837782.1	ncRNA:24   AGAGCAUCAAAUGUCCGCCUUAGA   1   |||||*||||||||||*||||||| targets:1537   UCUCGCAGUUUACAGGGGGAAUCU   1560 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244J06, full insert sequence	NA	coding protein	psRNATarget
AK288617.1	ncRNA:24   AGAGCAUCAAAUGUCCGCCUUAGA   1   |||||*|||||*|||||||||||| targets:2694   UCUCGCAGUUUUCAGGCGGAAUCU   2717 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090054B15, full insert sequence	NA	coding protein	psRNATarget
AK067679.1	ncRNA:24   AGAGCAUCAAAUGUCCGCCUUAGA   1   ||||**||||||||*||||||||| targets:2201   UCUCACAGUUUACAUGCGGAAUCU   2224 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013114G19, full insert sequence	NA	coding protein	psRNATarget
AK288343.1	ncRNA:24   AGAGCAUCAAAUGUCCGCCUUAGA   1   *|||**|||||||||||*|||||| targets:361   CCUCACAGUUUACAGGCAGAAUCU   384 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090023K08, full insert sequence	NA	coding protein	psRNATarget