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BaseInfo

ncRNA ID	novel_osa_miR488
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:1684368-1684527 [-]
Reference genome	IRGSP-1.0
Source	SRR1738244;SRR1743000;SRR1743006;SRR1849770;SRR1849772;SRR1849775;SRR2040391;SRR2040397;SRR2040403;SRR2040409;SRR2857729;SRR2857736;SRR3123648;SRR1738235
Length	24
Mature sequence(if miRNA)	1 - AAACGUUGUAAGAAAAACUCAAAA - 24
Stem-loop(if miRNA)	--UUA       G                            CAAU           --------------AA   AAAAAACAAAAA      GGUUUUU CUUGUAACGUUUGACCACUCGUCUUAUU    UUUUUUUUGCA                UGU            G      ||||||| ||||||||||||||||||||||||||||    |||||||||||                |||            U      UCAAAAA GAAUGUUGCAAAUUGGUGAGUAGAAUAA    AAAAAAAACGU                GAC            U AAAAC       -                            AUCU           GAAUGAAAUAAUAGAU   AUGAAAUUCGUG
Stem-loop sequence	UUAGGUUUUUGCUUGUAACGUUUGACCACUCGUCUUAUUCAAUUUUUUUUUGCAAAUGUAAAAAACAAAAAGUUGUGCUUAAAGUACAGUAGAUAAUAAAGUAAGUGCAAAAAAAAUCUAAAUAAGAUGAGUGGUUAAACGUUGUAAGAAAAACUCAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015763075.1	ncRNA:24   AAAACUCAAAAA-GAAUGUUGCAAA   1   ||||||||||||-|||||||||||| targets:2834   UUUUGAGUUUUUGCUUACAACGUUU   2858 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group protein trichome birefringence-like 28 (LOC4327430), transcript variant X3, mRNA	protein trichome birefringence-like 28(LOC4327430)	coding protein	psRNATarget
XM_015789462.1	ncRNA:24   AAAACUCAAAAAGAAUGUUGCAAA   1   ||||*||||||||||||||||||| targets:573   UUUUAAGUUUUUCUUACAACGUUU   596 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group proline-, glutamic acid- and leucine-rich protein 1 (LOC4343789), mRNA	proline-, glutamic acid- and leucine-rich protein 1(LOC4343789)	coding protein	psRNATarget
AK108488.1	ncRNA:24   AAAACUCAAAAAGAAUGUUGCAAA   1   ||||*||||||||||||||||||| targets:111   UUUUAAGUUUUUCUUACAACGUUU   134 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:002-143-F11, full insert sequence	NA	coding protein	psRNATarget