Search result

BaseInfo

ncRNA ID	novel_osa_miR480
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:32452968-32453065 [-]
Reference genome	IRGSP-1.0
Source	SRR1738244;SRR2040408;SRR2857729
Length	24
Mature sequence(if miRNA)	75 - AGAAGCUGUGGACUGUUUAGGGCA - 98
Stem-loop(if miRNA)	--AG     G   -           C     C  G   AA        U     AAGCU UGG ACUGUUUAGGG AGCUU UU CAG  GCAGUUUU G     ||||| ||| ||||||||||| ||||| || |||  |||||||| A     UUUGA ACC UGACAAAUCCC UCGAA AG GUC  UGUCGAAA U AUAG     A   A           C     C  G   GA        A
Stem-loop sequence	AGAAGCUGUGGACUGUUUAGGGCAGCUUCUUGCAGAAGCAGUUUUUGAUAAAAGCUGUAGCUGGGACAAGCUCCCCUAAACAGUACCAAAGUUUGAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288737.1	ncRNA:24   ACGGGAUUUGUCAGGUGUCGAAGA   1   |||=||||||||||=||||||||| targets:1071   UGCUCUAAACAGUCUACAGCUUCU   1094 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090063M20, full insert sequence	NA	coding protein	psRNATarget
AK067885.1	ncRNA:24   ACGGGAUUUGUCAGGUGUCGAAGA   1   ||||=*|||||||||||||||||| targets:1167   UGCCUCAAACAGUCCACAGCUUCU   1190 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013123F22, full insert sequence	NA	coding protein	psRNATarget
AK289102.1	ncRNA:24   ACGGGAUUUGUCAGGUGUCGAAGA   1   *||||*|||||*|||||||||||| targets:1859   AGCCCCAAACAAUCCACAGCUUCU   1882 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090096G03, full insert sequence	NA	coding protein	psRNATarget